UFO04984.5prime Sequence
1102 bp (997 high quality bases) assembled on 2009-06-30
> UFO04984.5prime
CAGTCGACATGCTGCTGCAGCAGTGCGGAAAAATCATCAATCTCGATCAG
CATTTCACCGAGTGCTGGAATACAAGCCCATTGCGAAACTTTGACTTCAT
CATCTCCCTTCTGAGCGTTATTTCCCTAAGTGTTGTTAAGATGGCCGCCA
TTCCACAAGGTGCATTCGCAGCCTGCAAGATTCGCGAGCAATTCAACGAA
CGTGAGCTGATCATCGCCCGTCTGAGGTCCGCTGCCGCAGATAAGGGTTC
CGTTGACAACGGGAACGCCCTAACCCAACGCGAGTACTCGCCCAACAAGT
ACAACGACAAGCTGATGAACTCCATCTGGGGATTGTACAATCGCTATTCC
CCCCACAATGTGAAGAAGAACGAGTACGCCCCCACCAAGGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCT
GAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGA
GTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCA
GTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAA
CGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGC
GTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATT
GGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGA
CGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCA
CCGTAACACCGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAATC
GTCGTGTATTCACTCCAGAGCGATGAAAACGTTCAGTTGCTCATGAAACG
TGTAACAGGTGAACACTATCCATATCACAGCTCACGTCTTTCATGGCATA
CGAAGTCGGATGACATCATCAGCGCAGATGGTGAATAGGTCGGATAAACT
GG
UFO04984.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16926-RB | 979 | CG16926-RB | 367..747 | 9..389 | 1905 | 100 | Plus |
| CG16926-RA | 884 | CG16926-RA | 272..652 | 9..389 | 1905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19500716..19500860 | 276..132 | 725 | 100 | Minus |
| 2R | 25286936 | 2R | 19500929..19501052 | 132..9 | 620 | 100 | Minus |
| 2R | 25286936 | 2R | 19500527..19500639 | 389..277 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:54:56 has no hits.
UFO04984.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:34 Download gff for
UFO04984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16926-RA | 238..625 | 1..389 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:47 Download gff for
UFO04984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16926-RA | 265..652 | 1..389 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:08 Download gff for
UFO04984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16926-RA | 265..652 | 1..389 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:08 Download gff for
UFO04984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19500929..19501058 | 1..132 | 96 | | Minus |
| 2R | 19500527..19500639 | 277..389 | 100 | <- | Minus |
| 2R | 19500716..19500859 | 133..276 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:47 Download gff for
UFO04984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15388221..15388364 | 133..276 | 100 | <- | Minus |
| arm_2R | 15388434..15388563 | 1..132 | 96 | | Minus |
| arm_2R | 15388032..15388144 | 277..389 | 100 | <- | Minus |
