UFO04988.5prime Sequence
1096 bp (1000 high quality bases) assembled on 2009-06-30
> UFO04988.5prime
CAGTCGACATGCAGAAGACAAGCATCCTTATCTTGGCACTTTTCGCCATC
GCAGAGGCAGTTCCCACAACAGGACCCATTCGGGTCCGTCGCCAGGTGCT
TGGAGGTTCCTTAGCCTCCAATCCCGCTGGAGGGGCTGATGCTCGGTTGA
ATCTCAGCAAGGGCATTGGCAATCCCAACCATAATGTGGTAGGTCAGGTT
TTCGCCGCCGGAAACACTCAAAGCGGTCCAGTCACAACTGGCGGAACTTT
GGCCTACAACAATGCTGGTCATGGTGCCTCTTTGACCAAAACACACACGC
CCGGAGTGAAGGATGTCTTCCAGCAGGAGGCCCATGCCAATTTATTCAAC
AATGGCAGACACAATCTGGATGCCAAGGTCTTTGCTTCACAAAATAAACT
GGCCAATGGCTTCGAGTTCCAGCGCAATGGAGCTGGTCTGGATTACTCCC
ACATCAACGGACATGGTGGATCCTTGACGCACAGCAACTTCCCAGGAATC
GGCCAGCAACTCGGCCTGGACGGACGTGCTAATCTCTGGTCATCGCCCAA
TCGTGCTACTACCTTGGACCTCACGGGATCGGCGAGCAAGTGGACGAGTG
GTCCGTTTGCCAACCAGAAGCCAAACTTTGGTGCTGGCCTGGGACTTTCC
CACCACTTCGGTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCA
GGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGC
CTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAAC
GCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT
CATTACTGGATCTATCAACAGGAGTCCCAGCGAGCTCGATATCAATTACG
CCCGCCCTGCCACTCATCGCAGTACTGTGTAATTCATTAGCATCTGCGAC
ATGAGCATCACAAACGCATGATGACTGATCGCAGCGCATCAGCACTGTCG
CTGCGTATATTTTGCATGTGAACGGGGCGAGAGTGGTCAATGCCGTATCA
ACTGGAACTCCCAGGATGCTGAACGAACATTCCATACCTTAGGAAT
UFO04988.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AttB-RB | 879 | CG18372-RB | 31..686 | 7..662 | 3280 | 100 | Plus |
| AttB-RA | 788 | CG18372-RA | 31..686 | 7..662 | 3280 | 100 | Plus |
| AttA-RA | 790 | CG10146-RA | 64..691 | 34..661 | 2705 | 95.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14749573..14749972 | 263..662 | 2000 | 100 | Plus |
| 2R | 25286936 | 2R | 14747718..14748116 | 263..661 | 1785 | 96.5 | Plus |
| 2R | 25286936 | 2R | 14749253..14749508 | 7..262 | 1280 | 100 | Plus |
| 2R | 25286936 | 2R | 14747425..14747653 | 34..262 | 920 | 93.4 | Plus |
| 2R | 25286936 | 2R | 13394170..13394369 | 283..482 | 355 | 78.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:17:12 has no hits.
UFO04988.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:14:20 Download gff for
UFO04988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AttB-RA | 26..694 | 1..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:52 Download gff for
UFO04988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AttB-RA | 26..694 | 1..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:45 Download gff for
UFO04988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AttB-RA | 26..694 | 1..670 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:45 Download gff for
UFO04988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14749248..14749508 | 1..262 | 99 | -> | Plus |
| 2R | 14749573..14749980 | 263..670 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:52 Download gff for
UFO04988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10636753..10637013 | 1..262 | 99 | -> | Plus |
| arm_2R | 10637078..10637485 | 263..670 | 99 | == | Plus |
