UFO04990.5prime Sequence
1091 bp (987 high quality bases) assembled on 2009-06-30
> UFO04990.5prime
CAGTCGACATGGCGCTGGTGGATCACGATTCCTGGGACATCGAGTACGAG
GGCTGCGAGCGACTGCGGCATCAGCTGCTGGTATACCTCAACCAGCGGCA
GCAGCTCAATCCGAGGACGAGCCAGTTCGTCCAACTGACAAGCAGCATTC
AGACGGGAATAGAGCAGCTGGCCAAGGACATGAAGCACCTCAAGGTGGTG
CTGGACAACGCCATCACCTGGGAGACGAGCCCGGAGGAGGAGCTGCAACA
GCGGCGCATCGACTGGGATAGACTTACTTCGCAGCTGCGCGAGATCCGCG
AGAAGTTCGCAAACAGTAGCCGCTCCAATGTCCCGGCCGCATCCGGTTCT
GCTTGGCAGGATCAGGATCTCGGCCCAGGTCACAGCAATTCCTCGCGGAA
TACCGCCTTGGATGTGGAGGCTCTGAAGCAGAAAAAGACCGAGATGCTGG
CGCAGCAGAACGAAGGACTCGAGGTTCTATCAGCCACATTGTCCAGACAG
CGCCAACTGGCCACACAGCTGGGCAACGAGGTGGAGGACCAGAACAATAT
CCTTGACAACTTGGCCAATGCCATGGACCGTGTGGAAACGGGTGTGCAGC
GGGAAACACAGAGCATTGGACAGGTTAACCGGCGGGACAGTACCTGGGGC
TACTGGCTCGTCATCATAGCCTTGTTCGTCGCCATCATTGTCGTGGTCTT
CGTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGA
TCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCG
GCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTG
GATCTATCACAGGAGTCAGCGAGCTCGATATCAAATACGCCCGCCTGCAC
TCATCGCAGTACTGTTGTATCATAGCATCTGCGAACATGCAGCATCCAAC
GCATGATGACTGATCGCAGCGCATCAGCCTGTCGCCTGGCGTTAATATTG
CATGGTGAACGGGCAGAGTTGCCATTGGCAGTATCAAACCT
UFO04990.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syx8-RA | 897 | CG4109-RA | 80..775 | 9..704 | 3480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16586441..16586978 | 546..9 | 2690 | 100 | Minus |
| 3L | 28110227 | 3L | 16586230..16586387 | 704..547 | 790 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:50:39 has no hits.
UFO04990.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:38 Download gff for
UFO04990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx8-RA | 115..820 | 1..705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:15:46 Download gff for
UFO04990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx8-RA | 73..780 | 1..711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:39 Download gff for
UFO04990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx8-RA | 73..780 | 1..711 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:39 Download gff for
UFO04990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16586225..16586387 | 547..711 | 98 | <- | Minus |
| 3L | 16586441..16586985 | 1..546 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:15:46 Download gff for
UFO04990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16579325..16579487 | 547..711 | 98 | <- | Minus |
| arm_3L | 16579541..16580085 | 1..546 | 99 | | Minus |
