UFO04994.5prime Sequence
1105 bp (999 high quality bases) assembled on 2009-06-30
> UFO04994.5prime
CAGTCGACATGTTCAAAGTGCGCAGCTTGGCGCTCATGAAATTGAGTGAA
GGCGTTTTCGGCGCACGACTAATGGCCAAATCGCCGAAGGATTCGGGCAA
GGATTCTTGCAAGGGTGCCGATTCCAAAAAGAAGAAAGACAAAAAGAAGA
AGGATATGTGTGGCAGAACTGTTGTTCCCACTTCACCACGTTGCAAAAAC
AAACCCGGCGGCTCAGACAAATCCAAAGATGAGTGCAAGAAAAAGGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCA
ACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTC
ATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCAT
CACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCG
CCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTC
CATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGG
CTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGG
TTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCG
GAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCT
CATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCA
CGTCTTTCATTGCCATACGAATTCCGGATGAGCATTCATCAGCGGGCAAG
ATGTGAATAAGGCGATAAAACTTGTGCTTATTTTTCTTTACGTCTTTAAA
AGCGTATATCAGCTGAACGGTCTGATTTAGTACATGAGCACTGACTGAAA
TGCCTCGAATGTTCTTTACGATGCATGGTAATATCACGTGCTTCCAGGAA
TTTTC
UFO04994.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43439-RA | 990 | CG43439-RA | 84..321 | 8..245 | 1190 | 100 | Plus |
| CG32388-RA | 990 | CG32388-RA | 84..321 | 8..245 | 1190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6984343..6984503 | 168..8 | 805 | 100 | Minus |
| 3L | 28110227 | 3L | 6984203..6984279 | 245..169 | 385 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:35:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 814..881 | 123 | 68.1 | Plus |
UFO04994.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:37 Download gff for
UFO04994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32388-RA | 61..311 | 1..251 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:04 Download gff for
UFO04994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32388-RA | 75..325 | 1..251 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:25 Download gff for
UFO04994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32388-RA | 75..325 | 1..251 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:25 Download gff for
UFO04994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6984203..6984279 | 169..245 | 100 | <- | Minus |
| 3L | 6984343..6984512 | 1..168 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:04 Download gff for
UFO04994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6977303..6977379 | 169..245 | 100 | <- | Minus |
| arm_3L | 6977443..6977612 | 1..168 | 98 | | Minus |
