UFO05002.5prime Sequence
1088 bp (955 high quality bases) assembled on 2009-06-30
> UFO05002.5prime
CAGTCGACATGCGATCTGTCATCGAGCCCGACCACAGCATCCAGCTTAAT
GAAGCCATCTACTGCTACGATATATGCACCAATGACTTTGCCTACAACCT
AATCGCAGTGGCCTTCAGGAAACACTTGAGTCTGCTGCTCGTTGGACTGC
CGGAGGAGAGCGGCGAGTTCGGGTACACACGCCTGCAGGACATGGACCTG
GGCGAAAAGGAGCAGCGGAGCGTGAGCGCACTGGCCTTCTCGCCGGACAC
CTCGCTCAACTGCACGCCCAACAATGTGACTTTGTGCGCGGCCAACGGCA
GCCAGCTTAAACTATACCGCACCGATCTGGGCCAGTTCACCTCGCTCCAG
GTGCTCCGTGGGCATGGGGACTACGTCAACGATGTATCCTGGGTTTGCGA
CGGCGAACTGCTGGCCTCCGTTAGCGATGACTTCACCTGCAGATTCTGGA
CGACGACAGGCGGCGGGGAGAATGTCATAACCTTTGGCCTGTCCTCCGCT
GGAATGTCCGTCAAGAGTCACCCCGAGGATCCCAACAAGGTTCTTGTGGC
GGAAAAGAAGGGCATCATTCATCTATACAATGTGACGCTCAAGCAGACAG
TCATCTCCGTGGAGTCGCCCAAATTCCCCCTGATGTCGGCGGACTGGGCC
CACAGCAACCGGCTCTTCATCACCTCGCTGGCCGGCGGAGATGTGGTTAC
CTGGGACCTGAACCGACCCTATGTGCCCGCGGATGTCAAGCAGGTCCACG
AGGATTGCGGCCGGGTGGTGCGCTTCGCGCCAGGCAGCTCCGAGATGGGT
ATCGCCATGGTCATCGGGCTGACTCTCAAAGTGTTCGCGGCCAAGTCGAC
CGTTCCTCTGCTGGAGGCCTCCCTGAAATCTATGGGGAATGGCCTGGCAC
AGCGATGCCGTACATTAGTGCGTTTCCGATAGGAACTGCTCTCTGAAGTG
CAAATGAGCAGCTTCTAGACCATCGTTTGGCGCGCGGCCAGGTAGGTGTC
ATAATCATATCAATCAATCATAATCACAACTAGCCTAGGGAGATCTGTCA
TGACCAGTGCCTGATCTCACATAAAACGCCGGCGCACG
UFO05002.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup37-RB | 1139 | CG11875-RB | 125..1082 | 9..957 | 4560 | 99 | Plus |
Nup37-RA | 1107 | CG11875-RA | 93..1050 | 9..957 | 4560 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25248172..25248582 | 152..562 | 2055 | 100 | Plus |
3R | 32079331 | 3R | 25248638..25249017 | 561..935 | 1635 | 98.4 | Plus |
3R | 32079331 | 3R | 25247963..25248107 | 9..153 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:17:17 has no hits.
UFO05002.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:15:34 Download gff for
UFO05002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11875-RA | 80..1045 | 2..961 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:56 Download gff for
UFO05002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup37-RA | 87..1052 | 2..961 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:49 Download gff for
UFO05002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup37-RA | 87..1052 | 2..961 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:49 Download gff for
UFO05002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25247957..25248106 | 2..152 | 97 | -> | Plus |
3R | 25248173..25248581 | 153..561 | 100 | -> | Plus |
3R | 25248639..25249045 | 562..961 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:56 Download gff for
UFO05002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21073679..21073828 | 2..152 | 97 | -> | Plus |
arm_3R | 21073895..21074303 | 153..561 | 100 | -> | Plus |
arm_3R | 21074361..21074767 | 562..961 | 97 | | Plus |