Clone UFO05002 Report

Search the DGRC for UFO05002

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:50
Well:2
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG11875-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO05002.5prime Sequence

1088 bp (955 high quality bases) assembled on 2009-06-30

> UFO05002.5prime
CAGTCGACATGCGATCTGTCATCGAGCCCGACCACAGCATCCAGCTTAAT
GAAGCCATCTACTGCTACGATATATGCACCAATGACTTTGCCTACAACCT
AATCGCAGTGGCCTTCAGGAAACACTTGAGTCTGCTGCTCGTTGGACTGC
CGGAGGAGAGCGGCGAGTTCGGGTACACACGCCTGCAGGACATGGACCTG
GGCGAAAAGGAGCAGCGGAGCGTGAGCGCACTGGCCTTCTCGCCGGACAC
CTCGCTCAACTGCACGCCCAACAATGTGACTTTGTGCGCGGCCAACGGCA
GCCAGCTTAAACTATACCGCACCGATCTGGGCCAGTTCACCTCGCTCCAG
GTGCTCCGTGGGCATGGGGACTACGTCAACGATGTATCCTGGGTTTGCGA
CGGCGAACTGCTGGCCTCCGTTAGCGATGACTTCACCTGCAGATTCTGGA
CGACGACAGGCGGCGGGGAGAATGTCATAACCTTTGGCCTGTCCTCCGCT
GGAATGTCCGTCAAGAGTCACCCCGAGGATCCCAACAAGGTTCTTGTGGC
GGAAAAGAAGGGCATCATTCATCTATACAATGTGACGCTCAAGCAGACAG
TCATCTCCGTGGAGTCGCCCAAATTCCCCCTGATGTCGGCGGACTGGGCC
CACAGCAACCGGCTCTTCATCACCTCGCTGGCCGGCGGAGATGTGGTTAC
CTGGGACCTGAACCGACCCTATGTGCCCGCGGATGTCAAGCAGGTCCACG
AGGATTGCGGCCGGGTGGTGCGCTTCGCGCCAGGCAGCTCCGAGATGGGT
ATCGCCATGGTCATCGGGCTGACTCTCAAAGTGTTCGCGGCCAAGTCGAC
CGTTCCTCTGCTGGAGGCCTCCCTGAAATCTATGGGGAATGGCCTGGCAC
AGCGATGCCGTACATTAGTGCGTTTCCGATAGGAACTGCTCTCTGAAGTG
CAAATGAGCAGCTTCTAGACCATCGTTTGGCGCGCGGCCAGGTAGGTGTC
ATAATCATATCAATCAATCATAATCACAACTAGCCTAGGGAGATCTGTCA
TGACCAGTGCCTGATCTCACATAAAACGCCGGCGCACG

UFO05002.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:18
Subject Length Description Subject Range Query Range Score Percent Strand
Nup37-RB 1139 CG11875-RB 125..1082 9..957 4560 99 Plus
Nup37-RA 1107 CG11875-RA 93..1050 9..957 4560 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25248172..25248582 152..562 2055 100 Plus
3R 32079331 3R 25248638..25249017 561..935 1635 98.4 Plus
3R 32079331 3R 25247963..25248107 9..153 725 100 Plus
Blast to na_te.dros performed on 2014-11-28 23:17:17 has no hits.

UFO05002.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:15:34 Download gff for UFO05002.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11875-RA 80..1045 2..961 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:56 Download gff for UFO05002.5prime
Subject Subject Range Query Range Percent Splice Strand
Nup37-RA 87..1052 2..961 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:49 Download gff for UFO05002.5prime
Subject Subject Range Query Range Percent Splice Strand
Nup37-RA 87..1052 2..961 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:49 Download gff for UFO05002.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25247957..25248106 2..152 97 -> Plus
3R 25248173..25248581 153..561 100 -> Plus
3R 25248639..25249045 562..961 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:56 Download gff for UFO05002.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21073679..21073828 2..152 97 -> Plus
arm_3R 21073895..21074303 153..561 100 -> Plus
arm_3R 21074361..21074767 562..961 97   Plus