Clone UFO05003 Report

Search the DGRC for UFO05003

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:50
Well:3
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO05003.5prime Sequence

227 bp (187 high quality bases) assembled on 2009-06-30

> UFO05003.5prime
CAGTCGACATGTGTTGGGCGACATCAGGTTCAAGTTTTCGAACCGAAAGC
ACCAGATCCATAATCCAAATGTTTAAATCCGACGTCCTTGTCTTGGCCAT
CGTCTCCTGCTCTGCTGCCAAGCCTGGACTGATTGGTGCGCCTTTGGCCT
ACACTGCTTACGTGGCTTACTCTCCTCTGGTGTACTAATGCCTACCCTCG
CTTGACTATCGACATAGTAGCGTCATG

UFO05003.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG18294-RA 507 CG18294-RA 14..163 28..177 345 82 Plus
CG12519-RB 600 CG12519-RB 12..161 28..177 345 82 Plus
CG12519-RA 507 CG12519-RA 12..161 28..177 345 82 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19477741..19477851 190..81 505 99.1 Minus
3L 28110227 3L 19423378..19423450 81..9 365 100 Minus
3L 28110227 3L 19477906..19477978 81..9 365 100 Minus
3L 28110227 3L 19487161..19487225 81..17 325 100 Minus
3L 28110227 3L 19423273..19423323 131..81 255 100 Minus
3L 28110227 3L 19472479..19472555 9..81 215 88.3 Plus
3L 28110227 3L 19467017..19467093 81..9 215 88.3 Minus
3L 28110227 3L 19475512..19475588 81..9 215 88.3 Minus
Blast to na_te.dros performed on 2014-11-28 21:18:29 has no hits.

UFO05003.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:15:35 Download gff for UFO05003.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32207-RA 481..683 1..201 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-05 00:03:33 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 21:48:35 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:35 Download gff for UFO05003.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19477728..19477851 81..201 97 <- Minus
3L 19477907..19477983 1..80 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:03:33 Download gff for UFO05003.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19470828..19470951 81..201 97 <- Minus
arm_3L 19471007..19471083 1..80 95   Minus