UFO05003.5prime Sequence
227 bp (187 high quality bases) assembled on 2009-06-30
> UFO05003.5prime
CAGTCGACATGTGTTGGGCGACATCAGGTTCAAGTTTTCGAACCGAAAGC
ACCAGATCCATAATCCAAATGTTTAAATCCGACGTCCTTGTCTTGGCCAT
CGTCTCCTGCTCTGCTGCCAAGCCTGGACTGATTGGTGCGCCTTTGGCCT
ACACTGCTTACGTGGCTTACTCTCCTCTGGTGTACTAATGCCTACCCTCG
CTTGACTATCGACATAGTAGCGTCATG
UFO05003.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18294-RA | 507 | CG18294-RA | 14..163 | 28..177 | 345 | 82 | Plus |
CG12519-RB | 600 | CG12519-RB | 12..161 | 28..177 | 345 | 82 | Plus |
CG12519-RA | 507 | CG12519-RA | 12..161 | 28..177 | 345 | 82 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19477741..19477851 | 190..81 | 505 | 99.1 | Minus |
3L | 28110227 | 3L | 19423378..19423450 | 81..9 | 365 | 100 | Minus |
3L | 28110227 | 3L | 19477906..19477978 | 81..9 | 365 | 100 | Minus |
3L | 28110227 | 3L | 19487161..19487225 | 81..17 | 325 | 100 | Minus |
3L | 28110227 | 3L | 19423273..19423323 | 131..81 | 255 | 100 | Minus |
3L | 28110227 | 3L | 19472479..19472555 | 9..81 | 215 | 88.3 | Plus |
3L | 28110227 | 3L | 19467017..19467093 | 81..9 | 215 | 88.3 | Minus |
3L | 28110227 | 3L | 19475512..19475588 | 81..9 | 215 | 88.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:18:29 has no hits.
UFO05003.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:15:35 Download gff for
UFO05003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32207-RA | 481..683 | 1..201 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-05 00:03:33 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 21:48:35 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:35 Download gff for
UFO05003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19477728..19477851 | 81..201 | 97 | <- | Minus |
3L | 19477907..19477983 | 1..80 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:03:33 Download gff for
UFO05003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19470828..19470951 | 81..201 | 97 | <- | Minus |
arm_3L | 19471007..19471083 | 1..80 | 95 | | Minus |