UFO05004.5prime Sequence
1130 bp (1029 high quality bases) assembled on 2009-06-30
> UFO05004.5prime
CAGTCGACATGGAGGCCATGAAGAAATTGGACGCGGACCTGGTGGCCCTT
TTCGCCACTGCTGCCTCCGCCGAACCTCTTAAGATTAGGAAACAGCAGGA
GGTCCTGTGGCCGGGAGCCGAGCCGGAGCAAACCGCCCAGGAATCGGAGG
ATGATGAGCTGGTGATGACGCCGGAGCTCTTCCGCAGCTGCAACGCCTTG
CAGCTGCACTTGGAGGCACTGACATTGCAGCCGGAGGGAACCCAACGCAT
GGAACTGGTTCAGAACGAAGTGCGACCCATTTTCACCGTGGAGTGCCAGC
TGTCGGGGGACTTGATCCGTAAAGTGCCGCGCCAACCGATGTTCCACATC
ATGCAGTTCGAGTCGGAGAAGTTCCAGAGCCTGACGCAGTGCACCCGTTT
CGGGCAGACGGCTCAGCGTCAGGTCGATATGGAAGATAAGAGCCTGCAGG
ATCCGGAACAGAGTGCTGGCCATGTAGACATCACGGTTTGGTGGCGCGAA
CCCGGCACCTGTCTCAACGAAATGCTCGGCATGGGCCGCCTGGAGCTCAG
GGAGCTCTACAGGGCATCCCTGTTGGAGCAGTGCAAGTGCATTGCCATTC
GGCGACGCGACGTCCACCTGGGTAGCGTGTACTTGAAGATCAGTCTGCTT
CAGAATTTGAATGGTAGCCCGGAGCAGCCGCAGCAACAGCAGCAGCAGCC
GGGCCAAAAGAACGAAAGTGGAAACAAGGCAGCAGGTGAATATATAGCAA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAAT
CATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTC
ATGACTAGTGCTTGGATTCTCACAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCCAGATGGAGTTCTGAGTCATTACTGGATCTATCAA
CAAGGAGTCAAGCGAGCTCGATATCAAATTACGCCCGCCCTGCACTCATC
GCAGTACTGTTGTAATTCATAAGCATTCTGCCGACATGCAGCCATCCAAA
CGGCATGATGACCTGATCGCCAGCGGCAACCAGCCACTTGGTCGCTGGCG
TATATTTGCCATGGTGAACCGGGGGCGAAA
UFO05004.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32425-RF | 2171 | CG32425-RF | 1166..1903 | 9..746 | 3690 | 100 | Plus |
| CG32425-RB | 1090 | CG32425-RB | 85..822 | 9..746 | 3690 | 100 | Plus |
| CG32425-RA | 2813 | CG32425-RA | 113..839 | 9..735 | 3635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20510053..20510790 | 9..746 | 3690 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:24:28 has no hits.
UFO05004.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:15:36 Download gff for
UFO05004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32425-RF | 1074..1826 | 1..753 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:34 Download gff for
UFO05004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32425-RB | 75..827 | 1..753 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:16 Download gff for
UFO05004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32425-RB | 75..827 | 1..753 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:16 Download gff for
UFO05004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20510043..20510793 | 1..750 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:34 Download gff for
UFO05004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20503143..20503893 | 1..750 | 99 | <- | Plus |
