UFO05005.5prime Sequence
1124 bp (1029 high quality bases) assembled on 2009-06-30
> UFO05005.5prime
CAGTCGACATGTCGGAAACCAGTGGACCCGCAGTGCGCATGCCTTGGGTG
GAAAAGTACAGACCAAGCGGTCTCGATGATTTGATATCTCACGAGGAAAT
AATATCAACAATAACCCGCTTTATAAGCCGCAAGCAGCTGCCCCATTTGC
TGTTCTACGGACCACCTGGCACGGGAAAAACGAGTACAATCCTGGCCTGC
GCTCGCCAATTGTATTCCCCTCAGCAGTTCAAGTCCATGGTCCTGGAGCT
GAATGCCTCAGATGACCGAGGCATTGGGATTGTGCGCGGTCAAATCCTTA
ACTTCGCGTCCACACGCACCATTTTCTGCGACACCTTTAAGCTGATCATT
TTGGACGAGGCCGATGCCATGACCAACGATGCCCAGAATGCCCTGCGCCG
CATAATTGAGAAATATACGGACAACGTGCGCTTCTGTGTGATTTGCAATT
ATTTGAGCAAAATCATTCCGGCCCTGCAGTCGCGTTGCACCCGTTTTCGG
TTCGCTCCATTATCCCAGGATCAGATGATGCCGCGACTAGAAAAAATCAT
CGAAGCCGAAGCTGTTCAGATAACTGAGGACGGCAAGCGGGCACTGCTGA
CCCTGGCCAAAGGTGATATGAGAAAGGTCTTGAACGTCCTGCAGAGTACC
GTGATGGCATTTGATACGGTCAACGAGGATAACGTCTACATGTGCGTGGG
CTATCCGTTGAGGCAGGATATTGAACAGATATTGAAGGCCTTGCTATCTG
GCAGTAGCTTGGAGGACTCCTTCAAAACTGTCGAAAGTGCCAAGTACGCA
AGAGGTCTCGCTCTGGAAGACATCATTACAGAATTGCATTTGTTCGTTAT
GAGACTTGAGCTGCCTATGTCGGTCATGACAAGCTTATTGTAAAGCTAGC
TCAGATCGAGGAGAGATTGGCCAAAGGATGTACAGAAGTGGCTCAAACTG
CAGCTCTGGTAGCCGCCTTCTTTATTTGCCGAGATATGGTTTCAATGGAG
AAGCAAGCTTCCTAGAACATTCGTTTGGCGCGCCGCCCAGTAGTGTCTAT
CATATCATAATCTTATCTATCCACTAGCTAGGAATCTGTATGACTTGCTG
ATTCCCACAATAAACGGCCTGGCA
UFO05005.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RfC3-RA | 1134 | CG5313-RA | 76..1071 | 9..1003 | 4820 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10419480..10419930 | 112..562 | 2195 | 99.1 | Plus |
| 2L | 23513712 | 2L | 10419992..10420205 | 564..777 | 1040 | 99.1 | Plus |
| 2L | 23513712 | 2L | 10420401..10420549 | 856..1003 | 695 | 99.3 | Plus |
| 2L | 23513712 | 2L | 10420268..10420345 | 778..855 | 360 | 97.4 | Plus |
| 2L | 23513712 | 2L | 10419358..10419423 | 46..111 | 330 | 100 | Plus |
| 2L | 23513712 | 2L | 10419265..10419303 | 9..47 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:18:43 has no hits.
UFO05005.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:15:38 Download gff for
UFO05005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC3-RA | 55..1050 | 9..1003 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:03:42 Download gff for
UFO05005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC3-RA | 76..1071 | 9..1003 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:41 Download gff for
UFO05005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC3-RA | 76..1071 | 9..1003 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:41 Download gff for
UFO05005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10419265..10419302 | 9..46 | 100 | -> | Plus |
| 2L | 10419359..10419423 | 47..111 | 100 | -> | Plus |
| 2L | 10419480..10419930 | 112..562 | 99 | -> | Plus |
| 2L | 10419991..10420205 | 563..777 | 98 | -> | Plus |
| 2L | 10420268..10420345 | 778..855 | 97 | -> | Plus |
| 2L | 10420401..10420549 | 856..1003 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:03:42 Download gff for
UFO05005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10419265..10419302 | 9..46 | 100 | -> | Plus |
| arm_2L | 10419359..10419423 | 47..111 | 100 | -> | Plus |
| arm_2L | 10419480..10419930 | 112..562 | 99 | -> | Plus |
| arm_2L | 10419991..10420205 | 563..777 | 98 | -> | Plus |
| arm_2L | 10420268..10420345 | 778..855 | 97 | -> | Plus |
| arm_2L | 10420401..10420549 | 856..1003 | 99 | | Plus |
