UFO05007.5prime Sequence
1122 bp (1016 high quality bases) assembled on 2009-06-30
> UFO05007.5prime
CAGTCGACATGGCAGAATACAACATGAGCCACATGGTGCGACCCCAGGGA
TTCAGTTTGGAAGAGCTGCGTCAGACTATGAGTCGATCGGCGATTCGGGA
ACAATGCTACTTTATTTATGCCACCGGCAATATTCTGGAGATTATATCTG
GTTTTGATGAACTGCTCAACCAGGAGGGGATCCAATTCGGAGCAGATAAA
CTGGCTGCGGTGTATGTATGCGGTTTGATGGTTTATCTACTCCATCATGA
GGACACGTCGGCCACCCAGGTGAAAAGAACTCTTTTCCTGCAAAAGTGCT
TCAATTATATGGCATGCTCCGAGGAAAGCCATATCCACCAGGTATGCGTC
CATGTCCTGGGTCTCTTGGATATCCAGAGTTCGAGCACAATGCTCAACCT
GATCCTCGGCTGCCGCGTGGCCAGTCCGCTGTGCACAATGGCCAGCGTTG
TGGCTAACTGTCTGCTCTGGGCCATGTTGGATCATATGTCGGACTTGGGC
CTGGACTTGCACCGATTGCGTCCGGCTAACACACTGCTGCTCGTCGTTGC
CGTGGTGAAGCCGCATATTTATGTAATATCCTATTTGCATTCCCTGCACC
TGGTGGTCCGTTTGATATCCAGCATCCTGCTGATCGGACCATTCAATGCC
CAGGGCCAGCAACTGTGCCAGGAGACCGATGTGCCGGAGGATTATATGAA
ACTGGCCAGGGACGATTGTTCGATATTAGTTCGCTGGCTAATCGCGATCG
TTGATGAGCTGCGTCCGCTGATGGTGGAGAACAACGATTTGGGGCATCTG
CATGAGCGCCTGGTGCTTTTGGAGTCCATATGTGAGCTTATGCAGCTCTT
GCATGGCCATTTGGTTAAGTGTTACCAAGGCAAAGTGGACCACAATGTAA
GGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGTCA
TATCATATCATATCATAATCATATCACCACTAGCCTAGGAGATCCTGTCA
TGACTAGTGCTTGGATTCTCAACAATAAAAACGCCGGCGGCACGAGGCGT
TCTGAACAATCGATGGGAGTTCTGGAGTCATTACTGGATCTTTCACAGGA
GTTCAAGCGAGGCTCGAATTCA
UFO05007.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15728-RB | 1250 | CG15728-RB | 158..1051 | 9..901 | 4445 | 99.9 | Plus |
| CG15728-RA | 1140 | CG15728-RA | 70..963 | 9..901 | 4445 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12627677..12628246 | 333..901 | 2800 | 99.8 | Plus |
| X | 23542271 | X | 12627419..12627612 | 139..332 | 970 | 100 | Plus |
| X | 23542271 | X | 12627233..12627364 | 9..140 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:18:53 has no hits.
UFO05007.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:15:40 Download gff for
UFO05007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15728-RA | 62..966 | 1..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:03:48 Download gff for
UFO05007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15728-RA | 62..966 | 1..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:46 Download gff for
UFO05007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15728-RA | 62..966 | 1..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:46 Download gff for
UFO05007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12627225..12627364 | 1..140 | 97 | -> | Plus |
| X | 12627421..12627612 | 141..332 | 100 | -> | Plus |
| X | 12627677..12628252 | 333..906 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:03:48 Download gff for
UFO05007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12521258..12521397 | 1..140 | 97 | -> | Plus |
| arm_X | 12521454..12521645 | 141..332 | 100 | -> | Plus |
| arm_X | 12521710..12522285 | 333..906 | 99 | <- | Plus |
