UFO05008.5prime Sequence
1110 bp (995 high quality bases) assembled on 2009-06-30
> UFO05008.5prime
CAGTCGACATGTCACCGCAAATCCGTCCACTTACGCCAGAGCTGCAAAAA
GTTGCCAAGGAGCAGCTCAAGGAGGATCCCGAACGTCTCGAAGCCGATCT
GCAGGCGTTTAAGACATGGATCGAGCAGCAGCCGCATCTAAATCCCCGAA
TGGATGATCAGTTTCTGGTGGCTTTCTTGCGCGGCTGCAAGTACAGTTTG
GAGCGGGCCAAGTCCAAGTTAGATAAGTACTACACGCTGAAGACCAAGTA
TCCGGACTATTTCCGAGTTACCAACACCACGGATAGCAAGTTCCGGGAGA
TTCATCAAACGGGTGCCATCATCTACCTGCCCACTCCGCTGAATGAAAAT
GGACCTCGCATCGGGATCTGGCGCATGGGATTGGTGCCAGTGGAGAAGTA
CACAATGCTGGAGTGCATGCAAGTGGCCCAGGCAATGCAGGAGATTGCCA
TTTTGGAGGACGACTACGCCAATGTCAATGGAGTAGTTTTCATTATGGAC
ATGAAGGGTGCCACCGCCGCACACTTGTTCCAGATGACGCCGTCGATGGC
CAAGAAATTCACTGTCTTCTCGGAGGAGGCACTTCCACTGCGTCTGAAGG
CACAGCATTTCATCAACACCATCACCGGATTCGAGCAGCTGTTCAACATG
TTCAAGCCAATGATGTCCAAGAAAATGCAGTCTCGCCTATTTGTGCACGG
CAACAAAATGGGGCTCTTGACGGAGCAGATTCCACTGAAATATCTGCCCG
AGGAATACGGCGGCGAGAATGGCACCACGCAGGACATCGTGGCCGCCATG
GAGAAGAAGTTGGACGAGTACGCCGATTTCTTCCAGGAAAATGTGAACTT
CGGCACCGACGAGAGCCTGCGTCCCGGAAAACCAATCGATTTTGAGGGGC
TTTTCGGAGTAGAAGTTCCTTTAGAAGCTCACGTGACGCAAGCTTTCTAG
ACCATTCGTTGGCGCGCGGGCCCAGGTAAGTGTCATAATCATAATCATAT
CATAATCATATCACACTAGCTAGGAGATCTGGTCATGACTAGTGCTGGAT
TCTCACATAAACGCCCGCGGCACGAGCGTTCTGAACATCGATGAATCTGA
GTCATTCTGG
UFO05008.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33514-RA | 1179 | CG33514-RA | 63..987 | 9..931 | 4575 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4365859..4366473 | 313..926 | 3025 | 99.8 | Plus |
| 3L | 28110227 | 3L | 4365496..4365800 | 9..313 | 1525 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:43:17 has no hits.
UFO05008.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:15:47 Download gff for
UFO05008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33514-RA | 1..930 | 9..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:27 Download gff for
UFO05008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33514-RA | 56..992 | 1..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:06 Download gff for
UFO05008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33514-RA | 56..992 | 1..935 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:16:06 Download gff for
UFO05008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4365489..4365800 | 1..313 | 98 | -> | Plus |
| 3L | 4365860..4366484 | 314..935 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:27 Download gff for
UFO05008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4365489..4365800 | 1..313 | 98 | -> | Plus |
| arm_3L | 4365860..4366484 | 314..935 | 99 | | Plus |
