UFO05011.5prime Sequence
1109 bp (985 high quality bases) assembled on 2009-06-30
> UFO05011.5prime
CAGTCGACATGTTGCGAATTCTACTTCTGCTACTGGCATTCTGTGCCTTG
GCACATGGACAGTGCCGATTCACCAGAGCTCAAGTGCAAGGGACCAATCG
GATCTTTATGGTGCGTGGTCAGAACCGCCAGCTGTCCCTTAAGCGAACAG
CCAGTTCGGCGGTTGGCGAAACCCTGCAGATGTGGTGCAATCCCCGGGAC
ATAGTGGCCACCACCTGCCAGGCGGGAAGGGTTCCAGCCTTCCAGCCACC
CTTGCCCATGACCTGCCGCGCTGCTCCGGCGGCCATCACCACACCGGTCC
AAGATCGCAGATGTCCGGCCACCATGTACCGGGTGGGCTACAACGTGGGC
AACAACCAGTTCCTGGAGCTCTATCGCGCCTGCTTCGATACCAGAGCTGT
GAGGGCTATCTTCGTGGAACACCGGGTGTATGGAAAGCCCTTCTATATCA
CCCGACCCTGTGTCCAATTTAGTTCGGATGGAGTGATCAGTGGCGCGGAT
GAAGCTAGCTATACGGTCCGAAATATCCACGGCACCTTTAGGAGGCTGTT
TGGCAACAATCAGAACTATATACCGAACAACCGCGATGTGATCATCAATC
GCGGACATCTGGCCGCCTCGGCCGACTTCTTCTTTGGTGACCAATTGTGC
GCCACCTTCAAGTATGTGAATGCAGTGCCGCAGTTCAAGAGCATCAACGA
TGGCAACTGGGAGACCATCGAGCGATTCGTTCGTAATTCGGTGACCGGAA
ACAACTTTGTGAATGTGCGCACCGGGGCCAGGGGCGTACTCTCGCTGCCA
TCGGGCAATAGACCCAAGAATGTCTTCCTAAGTGGCAACAGGAACCCGGT
GCCCCAGTGGATGTACAGATAGTGCGGAACGCCAACAACCAGCCCATCGT
GACCTTTCTCACCCTGAACACATCTACGCACGTCAACGTCAGCTGCTCCC
ACTTTTGTCAGCCCGTGATTGCCAGTGCATTGGTCACACGCACAGCTGCT
TTCGTTCTTGTTTGCAACCCGCCACTTCAGCCGCAGCTTTCTAGACATCG
TGGCGCCGGCCAGTATGGCTAATCTAATCGATTCCTATCTAATCAACTAG
CCTAGGAGA
UFO05011.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:51:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14062-RB | 1180 | CG14062-RB | 4..1033 | 9..1027 | 4755 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:51:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28641798..28642325 | 968..445 | 2410 | 98.9 | Minus |
| 3R | 32079331 | 3R | 28642396..28642789 | 444..51 | 1970 | 100 | Minus |
| 3R | 32079331 | 3R | 28642846..28642888 | 51..9 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:51:34 has no hits.
UFO05011.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:15:26 Download gff for
UFO05011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14062-RB | 1..1008 | 6..1002 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:30 Download gff for
UFO05011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14062-RB | 1..1008 | 6..1002 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:02 Download gff for
UFO05011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14062-RB | 1..1008 | 6..1002 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:02 Download gff for
UFO05011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28641798..28642325 | 445..968 | 98 | <- | Minus |
| 3R | 28642396..28642788 | 52..444 | 100 | <- | Minus |
| 3R | 28642846..28642893 | 1..51 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:30 Download gff for
UFO05011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24467520..24468047 | 445..968 | 98 | <- | Minus |
| arm_3R | 24468118..24468510 | 52..444 | 100 | <- | Minus |
| arm_3R | 24468568..24468615 | 1..51 | 92 | | Minus |
