UFO05012.5prime Sequence
1089 bp (987 high quality bases) assembled on 2009-06-30
> UFO05012.5prime
CAGTCGACATGAGCCGAAAGTTCTGCGTGGGAGGCAACTGGAAGATGAAC
GGCGACCAGAAGTCCATCGCCGAGATCGCCAAGACCCTGAGCTCGGCCGC
CCTCGACCCCAACACGGAGGTGGTCATCGGCTGCCCGGCCATCTACCTGA
TGTACGCCCGCAACCTGCTGCCCTGCGAGCTGGGTCTGGCCGGCCAGAAT
GCCTACAAGGTGGCCAAGGGCGCATTCACCGGCGAGATCTCCCCTGCGAT
GCTGAAGGACATCGGCGCCGACTGGGTGATCCTGGGACACTCGGAGCGTC
GCGCCATCTTCGGCGAATCGGACGCCCTGATCGCCGAGAAGGCCGAGCAC
GCCCTGGCCGAGGGCCTCAAGGTCATCGCCTGCATTGGTGAGACCCTGGA
GGAGCGCGAGGCCGGCAAGACCAACGAGGTGGTGGCCCGCCAAATGTGCG
CCTACGCCCAGAAGATCAAGGACTGGAAGAACGTGGTGGTGGCCTACGAG
CCCGTCTGGGCCATTGGCACCGGCCAGACCGCCACACCCGATCAGGCTCA
AGAGGTCCACGCCTTCCTGCGCCAGTGGCTGAGCGACAACATCTCCAAGG
AGGTGTCCGCCAGCCTGCGCATCCAGTACGGTGGATCCGTGACCGCCGCC
AACGCCAAGGAGCTGGCCAAGAAGCCCGACATAGATGGCTTCCTGGTCGG
AGGCGCCTCCCTGAAGCCCGAGTTCGTGGACATCATCAACGCCCGGCAGG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCAT
AATCATAATCATAATCATAATCATAATCACAACTAGCCCTAGGAGATCCT
GGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAAACGCCCGGCGGCA
ACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGAT
TTTTCAACAGGAGTCCAAGCGAGCTCGATATCAATTACGCCCCCGCCCTG
CCACCTCATCGCCAAGTAACTGTTTTTTAATTCATTAAGCATTCCTGCCC
GACATGCAGCCATCCACAAAACCCATGATGACTGATTCG
UFO05012.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tpi-RC | 1268 | CG2171-RC | 262..1004 | 7..749 | 3715 | 100 | Plus |
| Tpi-RB | 1112 | CG2171-RB | 106..848 | 7..749 | 3715 | 100 | Plus |
| Tpi-RA | 1374 | CG2171-RA | 368..1110 | 7..749 | 3715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30133509..30134048 | 546..7 | 2700 | 100 | Minus |
| 3R | 32079331 | 3R | 30133245..30133451 | 749..543 | 1035 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:56:31 has no hits.
UFO05012.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:15:29 Download gff for
UFO05012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tpi-RC | 223..975 | 1..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:06 Download gff for
UFO05012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tpi-RA | 363..1115 | 1..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:13 Download gff for
UFO05012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tpi-RA | 363..1115 | 1..755 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:13 Download gff for
UFO05012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30133240..30133448 | 546..755 | 99 | <- | Minus |
| 3R | 30133510..30134053 | 1..545 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:06 Download gff for
UFO05012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25958962..25959170 | 546..755 | 99 | <- | Minus |
| arm_3R | 25959232..25959775 | 1..545 | 99 | | Minus |
