UFO05013.5prime Sequence
1116 bp (1021 high quality bases) assembled on 2009-06-30
> UFO05013.5prime
CAGTCGACATGGCATTTACCAGCAGCTCATCGCCCGCTTGGGATTATCGA
AGCTCCCCGGAAGCGTTGGGTGTCGTCCCGTTCCTGTGGCAGCACCAGAA
CGCCACGGAAACGCCAACGGAAATAACCCTCCAGGCGACCAGTTTCGGTG
CCGGCCATCTGCTGTGGCTAGCCATCAATGCCTTCTTGTTTGTCCTTATC
CTGGGCGGCAATATTCTGACCATTGTGGCGGTGCGCACCTGCCGCCACCT
GCGATCGGTCATCTCCAATCTGTTCATCCTGTCGCTGGCCGTCTCCGACT
TCTGTGTGGGACTGGCACTGCCCTATCATCTGGTATTTTACATGGGCTCG
GACATTGGCGCCATGAGAGGTCCCTGCCTGCTGCGCTTCTTCCTGCTCAT
CTGCGCCTGCTGCGTGTCCATGTTGACTCTGATCTCGATTGCGGTGGATC
GGTATATAGCAGTCGTCTATGCTCTGCACTATAGAAGATACATGACCCGT
CGAGTGGCATATAGCATCATCATATTCAATTGGTGCTTGGGTGCATTGGT
GGCTCTGCTGCCAGTGTTCTGGAATCGATGGCCGGATGCACAGGCGTGCG
AATTCGACGAAGTTCTCGCGCCTGGTTACATTGCCGGAGTGATAACGCCG
GGTTTTGTGATCATCTGGATCTGTATGTTCCTCGTCTACTGGCGCATCAT
GCGCGAGGCATCCAAGCAGGCGCTGCGATTGCGACAGTCGGTGGTCTACA
ACACGGACGAGGCCACCACCATGCGAAATCTGCTGCTCCATCCAGACTGG
AAGAGCGTCCAGATTGTGGTCTTCATCATGGGCTGCTTCACGCTCTGTTG
GCTACCGTACTTCTGTGTGGCCATTGCCCAGCTATTTAGCATCTGCCAGA
GCAGCTCGATGATCTACAGACGACGTTCTCTCTGGCCATTGCCACTCTGC
TCTCAATCGATTATCTACTCGTGAAGAACTCTGGCTTTCGCGAGCTTTGT
TCCAACATTATGCTGCCGACGGCGAGCATGCGAGGATCAATTGCGGCGAC
AGCAGCACCGCATGAGCACATCCTCTCTCTCAGGAATTCAACCGAGCACT
CAGGCAGCCTCTAGAA
UFO05013.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12796-RA | 1218 | CG12796-RA | 23..1114 | 8..1085 | 5030 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6832183..6832662 | 487..8 | 2400 | 100 | Minus |
| X | 23542271 | X | 6831575..6832114 | 1019..486 | 2370 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:30:32 has no hits.
UFO05013.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:15:52 Download gff for
UFO05013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12796-RA | 1..1068 | 9..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:23 Download gff for
UFO05013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12796-RA | 16..1091 | 1..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:14 Download gff for
UFO05013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12796-RA | 16..1091 | 1..1064 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:14 Download gff for
UFO05013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6831540..6832112 | 488..1049 | 97 | <- | Minus |
| X | 6832183..6832669 | 1..487 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:23 Download gff for
UFO05013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6725573..6726145 | 488..1049 | 97 | <- | Minus |
| arm_X | 6726216..6726702 | 1..487 | 99 | | Minus |
