UFO05016.5prime Sequence
1160 bp (1064 high quality bases) assembled on 2009-06-30
> UFO05016.5prime
CAGTCGACATGAAAACCCAAATAACAGACATTAATCATTTTGCTTTCTTT
CGCATACTCGACATTCTGAAGAAAAACTGTGAAACACAGCATGGCGATGA
AACTGAGGAGATCATAAAATACGCTGATATCCTTAATTTCGCTACCGCAA
GCTTTAAATTTACACGAATCGTTAGGGACTGGGATATACATTTCTACACA
CGTTTGGCGATACATGAGTTGCATGTAGTTCCGCGGAGAAATATAACCAT
AAACCTTGACGCGATGTATAAAACTCTAAATGCAGAAACAGAGGAAGGAA
GAAAGCATTTGGTGAACATCATAACTAGTATCGTATCAAATCCCAGTATT
CGAAGACTTAAACTGAATAATCTCGATGCATTCTTTTACGAGGAGCACTC
GAGTTTCGCTGATGAAATTTTAAAGATATTGCAATTGAAACGTAACAGCA
AACCAATTGAGTTAATTCTTAATATACCAGGTCGTGAAATACGTAACCTT
CATGGCTTTCGAAATATCTCCAAGCTCATCCTAACGGCATCTATTGAAAT
TTCTGACCTTGAGAAATTTTGCCTTTATAACCCTAAATTGAGTACCTTGG
AAGTGAATCAAAGTCACTTTTCCGACCATGGAAAGCTAGCTCAAATCGTT
CCCCACTGCTCCAATTTAAAGAATTTAAAATTTATACTGGATGATAATGC
ATGGGATAATGATTACGTCAGACTATCGCGTTTAAATAGGCTACAAAAAT
TGATAATTCTGCTGCCTGAAAATAATGAAAATGATATGGAAATCGACATT
GAATCGCACGAAGAAGAAGAAGATATGGGCATGTACTTCGAGGAAATTGG
AGCAGTCTCACTTATACGCGGTCCATTCCAATCTTTCAGCTCCTTAAAGC
TTTACACGAAAAGGAAAATCTACACTAAGGATTTGCGTTTAGGTTTACAT
TGATGATGAAATGTACAGCTTATTTCGAATTAATGAACTACGAGGGTGGA
GTGCGGATTTTATGATCTAAAGCGTTAGCCATTTTGTACAACACCAATCT
TAAACGATAGCACACCCATAGCTTCAATAATACGATGAATATGCAGCTTT
GCTAGAAAACATGCACTTTCTCAGTAGACCCAAAATATTTTATGCTACGA
CCTTAGTATT
UFO05016.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32115-RA | 1560 | CG32115-RA | 120..1256 | 9..1123 | 5115 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12912347..12912998 | 1109..478 | 2420 | 95.7 | Minus |
| 3L | 28110227 | 3L | 12913054..12913527 | 482..9 | 2370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:24:32 has no hits.
UFO05016.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:15:53 Download gff for
UFO05016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32115-RA | 114..1256 | 1..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:37 Download gff for
UFO05016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32115-RA | 114..1256 | 1..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:19 Download gff for
UFO05016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32115-RA | 114..1256 | 1..1123 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:19 Download gff for
UFO05016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12912335..12912995 | 481..1119 | 96 | <- | Minus |
| 3L | 12913056..12913533 | 1..480 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:37 Download gff for
UFO05016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12905435..12906095 | 481..1119 | 96 | <- | Minus |
| arm_3L | 12906156..12906633 | 1..480 | 99 | | Minus |
