UFO05017.5prime Sequence
1109 bp (1019 high quality bases) assembled on 2009-06-30
> UFO05017.5prime
CAGTCGACATGTTTTCCCGCAGTCGCTGTGGTTCACTTGTAACAAGTGTG
GCTCGCAAAATGTGGAACCACCCAAGCCAGCGCTGGCTCATCTTGATCTG
CGTTATATGTTTGCTGTCTTTTGCGCTGGCCAATTCGCTTCATGGCTATG
CTAATGCTGAAGGTCATCCAGTGGAGATTTCGGCCACATTGCCAGGCCAG
CTGAAGTTTGTGCATGTCATATATCGCCACGGCGACAGAACGCCCGTGGA
TCCCTATCCCACGGACCCCTGGGGCGACAGGAAGTTCTGGCCCACCGGCT
GGGGAGATTTGACCAATTTGGGCAAGCAAGAGCACTACGACCTGGGAAAA
TGGCTGCGGAATCGCTATTCAAACCTCCTACCGCCTATATACTCCAACGA
GAACATCTACGTTCAGTCCACCGACGTGGATCGCACATTGATGAGTGCCC
AGTCGAATCTGGCTGGTCTCTACGAGCCGCAAGGGGAAGACATCTGGAAC
ACGGACATCAACTGGCAACCCATACCCATTCACACCTCGCCCGAGAGGGA
GGATCCCATACTGGCCGCTAAGGCACCTTGTCCTGCCTATGACTATGAGC
TGGCCAGCCTGGAATCATCGCCAGAATTCAAGGCCTTGACCGAAAAACAC
CGAAATCTGTTTGCTTATTTGAGCGAAAAAGGCGGACGCCCCGTGAAGAC
CTTCATTGATGCCCAGTATTTGAATAACACCTTGTTCATTGAGAATCTGT
ACAACATGACACTGCCAAAATGGACTAAAATGGTTTATGGGAGAGAGGAG
CTCACGTATGTATCGAATTTCGCTTTCGCCATCAGCTCTTATACGCGAAA
GCTGGCGAGACTGAAGCGGGGCCTTTGCTAAAGGACATATTCCAGCGGTT
TAAAGAGAATCCTCCGGGAGCTAAAACCAGATCGTTCGATGTGGGTCTAC
AGTGCTCATGACACCACGGTAGCCAGCGTTTTGAATGCGCTGAAATTATT
TGAGCTGCACAGTCCTCCCTAACCGCGTGCATAATGATGGAGTTGGTGTG
GATGAAACAACACCCGTTGTCCTATTTTCTACAGAACACACAGCTGACCT
GCCTGGACA
UFO05017.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acph-1-RB | 1889 | CG7899-RB | 82..1181 | 9..1097 | 5195 | 98.8 | Plus |
| Acph-1-RA | 1944 | CG7899-RA | 149..1236 | 21..1097 | 5135 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29992083..29992772 | 1004..318 | 3300 | 99.6 | Minus |
| 3R | 32079331 | 3R | 29992986..29993195 | 218..9 | 1050 | 100 | Minus |
| 3R | 32079331 | 3R | 29992829..29992927 | 317..219 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:56:43 has no hits.
UFO05017.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:15:54 Download gff for
UFO05017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acph-1-RB | 77..1188 | 1..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:15 Download gff for
UFO05017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acph-1-RB | 77..1188 | 1..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:21 Download gff for
UFO05017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acph-1-RB | 77..1188 | 1..1105 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:21 Download gff for
UFO05017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29992986..29993200 | 1..218 | 98 | | Minus |
| 3R | 29991968..29992012 | 1005..1047 | 93 | <- | Minus |
| 3R | 29992083..29992772 | 318..1004 | 99 | <- | Minus |
| 3R | 29992829..29992927 | 219..317 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:15 Download gff for
UFO05017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25817690..25817734 | 1005..1047 | 93 | <- | Minus |
| arm_3R | 25817805..25818494 | 318..1004 | 99 | <- | Minus |
| arm_3R | 25818551..25818649 | 219..317 | 100 | <- | Minus |
| arm_3R | 25818708..25818922 | 1..218 | 98 | | Minus |
