UFO05018.5prime Sequence
1152 bp (1038 high quality bases) assembled on 2009-06-30
> UFO05018.5prime
CAGTCGACATGACGAGTGCAAGTCTATTGTCGCGTTCCCTGCTAACAGAA
GCTCCGCGTTCTAAGAATCGCTCGGTGTTTACCTTGATTGCTGGTTTGGT
GGTCGGCTACTGCCTGGCTCAAATCTTCTCCAGCATTGCGCCGCACGAGA
GTCTCTATCCGTATCTCAGCAGACGGTTCAGCGATTCCCAGGTGGCCACC
GGTGGTCAATTGGCTCCGGAGCAGAGCGGGTTGAAGCATGATCATCGCAA
CGACAACGTCAGCGTGGCCGAGCAGTTGAAGAAGGAGGTACGCATCCTCT
GCTGGGTGATGACCAATCCCACAAACCACAAGAAGAAGGCTCGCCATGTG
AAGCGAACCTGGGGCAAGCGCTGCAACATCTTGCTCTTCATGAGTTCCGG
CGCGGATGAGGAGCTGCCCACCGTGAAGCTCGACGTGGGCGAGGGACGGG
AGAATCTATGGGCCAAGGTCAAGGAGGCGTTCAAGTACGTCTATCATCAC
CACTATAACGACGCCGACTTCTTCTACAAGGCCGATGACGACACTTACGC
CGTGATCGAGAACATGCGGTATATGCTCTATCCGTACAATCCCGAAACAC
CCGTGCACTTCGGATTCAAGTTCAAGCCCTTCGTGAAGCAGGGCTACATG
TCCGGCGGAGCGGGCTACATACTCAGTCGGGAGGCCCTGCGTCGCTTCGT
GGTCGAGGGCATTCCGAATCCCAAGATGTGCCTGCCGGGCACGGTGGTCA
ACGAGGACATCGAAATCGGGCGATGCATGGAGAACCTGAACGTCACCGCC
GGCGATTCCAGGGACGAAATCGGTCGCGGTCGCATGTTTCCCTTCATACC
GGAGCATCACTTGATCCCAGCCAAGGCGGATAAAACTTTTGGTACTGGAA
CTACCTTTACTACAGACGGATGACGGTCTCGACTGCTGCTCGGACTTGAC
CATCTCCTTTCACTACGTAGCCTCCGAATTCCTTCTATGTCCTGGCTATC
TCATCTACCACTTGAACCCTACGGCCTACTGCGATCCCTGGAGCCTCTGC
CCGCCAACTCAAGTGGTCAGTTCTGCCGCTCCCAGGAGCCAGGGGGCTGC
GTACGAGATTCCGTCGATGATCACGGATCTACGATCGACGAAGCCAAGAC
CG
UFO05018.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8708-RD | 1862 | CG8708-RD | 349..1447 | 9..1097 | 5170 | 98.7 | Plus |
| CG8708-RB | 1674 | CG8708-RB | 161..1259 | 9..1097 | 5170 | 98.7 | Plus |
| CG8708-RC | 1626 | CG8708-RC | 155..1211 | 51..1097 | 4960 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8160054..8160931 | 925..50 | 4290 | 99.8 | Minus |
| 2L | 23513712 | 2L | 8944428..8944862 | 731..297 | 705 | 77.5 | Minus |
| 2R | 25286936 | 2R | 8159868..8160001 | 1057..925 | 510 | 97 | Minus |
| 2R | 25286936 | 2R | 8161033..8161075 | 51..9 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:51:49 has no hits.
UFO05018.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:15:56 Download gff for
UFO05018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RB | 147..1238 | 1..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:16:30 Download gff for
UFO05018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RB | 152..1243 | 1..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:09 Download gff for
UFO05018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RB | 152..1243 | 1..1083 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:09 Download gff for
UFO05018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8159868..8160001 | 925..1057 | 97 | <- | Minus |
| 2R | 8160055..8160929 | 52..924 | 99 | <- | Minus |
| 2R | 8161033..8161079 | 1..51 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:16:30 Download gff for
UFO05018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4047373..4047506 | 925..1057 | 97 | <- | Minus |
| arm_2R | 4047560..4048434 | 52..924 | 99 | <- | Minus |
| arm_2R | 4048538..4048584 | 1..51 | 92 | | Minus |
