UFO05019.5prime Sequence
1143 bp (994 high quality bases) assembled on 2009-06-30
> UFO05019.5prime
CAGTCGACATGGAATACCGGTGCTTAAGTAGAAGTTCTGTCAAACACCTA
ACGGCTCTCTGCGTCCTCAGCATCGCACTCACCTGCGCAAACGCGGCATT
GTGGCCAAGTTACAGCAGCGATGATGCGCCCCCCAGCCGCTGCAGCGGTG
GGCGTGGCCTGAAGTACCTATCGGGCGATGCGCTGACGGACTCGCTGGAC
TGCCTGGGTCCCAATAATGCGCCATATCCGAGCGCGGCCGTGGCGCGCAC
ATTCTCCAACTGGAACGGAAACTCGCGACGTGGCCGCCAGAGCAAATTGC
CCAGCACACTGGACCCAGCCATAACCACCAGTGCTCTGCTGAGGGCCTAC
GACGAGGTGAACAACGAGGCCGTCGGAAGCAGTCGCTATGGTCGTTCGCT
GAAGAACGCCACGCCGGCGCAGCAGTGCAAGAGCGAGACGCCGGCGCGCC
TCTGCAAGACGCGCTACAATACCACGGCGCCCATGTACGGAGTGAGCCTC
ACCTCCGGCCAGCCGGTGACCATCGTCCAGAAGTTCCCCGATCTCCTGCA
GCAGGTGGTCTTCGAAGTGTGCGAATCCTCTGAGTGCGATGTGGTCCGCG
GCGAGTGTACGCAAACCTATGTGCCCTACCTGTTCCTGGTCATTCCGCTC
GGCCCGGTGACGCTGACTGGCCAGGATTACGTGCTGGTGGAGAGCGGATG
CGTGTGCAAGCCCAAGTACTCGACGGGCGCCGCCCAGGAGCCGAACATGA
TACCGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGC
GGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTTA
CTGGATCTATCAACAGGAGTCCAAGCCGAGCCCCGATATCAATTACGTCG
GCTGCACTCATCGCAGTACTGGTTGTTATTCATTAGCATTCTGCCGACAT
GGAAGCCATCCACAAACGGCATGATGACCTGAATCGCCAGCGGCCATCAG
CCTTGTCGCTGCGGTAAAATATTGCCATGGCGACCGGGGGGCG
UFO05019.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17672-RA | 1483 | CG17672-RA | 331..1077 | 9..755 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13035032..13035219 | 45..232 | 940 | 100 | Plus |
| 3L | 28110227 | 3L | 13035584..13035768 | 390..574 | 925 | 100 | Plus |
| 3L | 28110227 | 3L | 13035918..13036098 | 575..755 | 905 | 100 | Plus |
| 3L | 28110227 | 3L | 13035293..13035454 | 231..392 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:18:59 has no hits.
UFO05019.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:15:57 Download gff for
UFO05019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17672-RA | 319..1075 | 1..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:03:52 Download gff for
UFO05019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17672-RA | 321..1077 | 1..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:50 Download gff for
UFO05019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17672-RA | 321..1077 | 1..755 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:50 Download gff for
UFO05019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13035585..13035768 | 391..574 | 100 | -> | Plus |
| 3L | 13035918..13036098 | 575..755 | 100 | == | Plus |
| 3L | 13029282..13029327 | 1..44 | 91 | -> | Plus |
| 3L | 13035032..13035219 | 45..232 | 100 | -> | Plus |
| 3L | 13035295..13035452 | 233..390 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:03:52 Download gff for
UFO05019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13022382..13022427 | 1..44 | 91 | -> | Plus |
| arm_3L | 13028132..13028319 | 45..232 | 100 | -> | Plus |
| arm_3L | 13028395..13028552 | 233..390 | 100 | -> | Plus |
| arm_3L | 13028685..13028868 | 391..574 | 100 | -> | Plus |
| arm_3L | 13029018..13029198 | 575..755 | 100 | == | Plus |
