UFO05020.5prime Sequence
1111 bp (1006 high quality bases) assembled on 2009-06-30
> UFO05020.5prime
CAGTCGACATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACT
CTTGAGGTCGAACCGTCGGATACTATCGAAAATGTCAAAGCCAAGATTCA
GGACAAAGAAGGAATTCCTCCAGATCAGCAGCGTCTGATCTTCGCTGGCA
AGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAACATTCAGAAGGAG
TCCACTTTGCACTTGGTGCTCCGCCTGCGTGGTGGTGCCAAGAAGCGCAA
GAAGAAGAACTACTCCACTCCCAAGAAAATCAAGCACAAGAGGAAGAAGG
TCAAGCTAGCTGTCCTGAAATACTACAAGGTTGACGAGAACGGCAAGATC
CACCGTCTCCGTCGCGAGTGCCCTGGTGAGAACTGCGGCGCCGGCGTCTT
CATGGCTGCCCACGAAGATCGTCACTACTGCGGCAAGTGCAACCTGACCT
TTGTCTTCAGCAAACCAGAGGAAAAGGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCA
TAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCT
CACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGA
TGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCT
CGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAAT
TCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAAC
CTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGC
CCATGGTGAAAACGGGGGCGAAGAGTTGTCCATATTGCCACGTTTAAATC
AAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTTC
TCAATAAACCCTTTAGGGAAATAGGCCAGTTTTCACGTACACGCCACATC
TTGCGAATTAATGTGTAGAACTGCGAATCGTCTGTATTCCCTCCGAGCGA
TGAACGTTTCAAGTGGCTCATGGAAACGGGTTACAGGTGAACTATCATTT
ACCAGTCACGC
UFO05020.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS27A-RA | 592 | CG5271-RA | 56..523 | 9..476 | 2340 | 100 | Plus |
RpL40-RB | 659 | CG2960-RB | 123..350 | 9..236 | 705 | 87.8 | Plus |
RpL40-RA | 587 | CG2960-RA | 65..292 | 9..236 | 705 | 87.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10409731..10410053 | 9..331 | 1615 | 100 | Plus |
2L | 23513712 | 2L | 10410239..10410387 | 328..476 | 745 | 100 | Plus |
2L | 23513712 | 2L | 4228025..4228252 | 9..236 | 705 | 87.3 | Plus |
X | 23542271 | X | 6277382..6277609 | 235..8 | 585 | 83.8 | Minus |
X | 23542271 | X | 6277610..6277837 | 235..8 | 585 | 83.8 | Minus |
3L | 28110227 | 3L | 3900848..3901075 | 236..9 | 585 | 83.8 | Minus |
X | 23542271 | X | 6277149..6277381 | 240..8 | 580 | 83.3 | Minus |
X | 23542271 | X | 6278294..6278521 | 235..8 | 570 | 83.3 | Minus |
X | 23542271 | X | 6278522..6278748 | 235..9 | 565 | 83.3 | Minus |
X | 23542271 | X | 6277838..6278065 | 235..8 | 555 | 82.9 | Minus |
X | 23542271 | X | 6278066..6278293 | 235..8 | 555 | 82.9 | Minus |
X | 23542271 | X | 6282957..6283184 | 235..8 | 540 | 82.5 | Minus |
X | 23542271 | X | 6282729..6282956 | 235..8 | 510 | 81.6 | Minus |
X | 23542271 | X | 6282501..6282728 | 235..8 | 480 | 80.7 | Minus |
X | 23542271 | X | 6282306..6282500 | 202..8 | 450 | 82.1 | Minus |
X | 23542271 | X | 6280764..6280882 | 127..9 | 220 | 79 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:01:31 has no hits.
UFO05020.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed on 2010-08-02 18:15:58 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:31 Download gff for
UFO05020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS27A-RA | 56..529 | 9..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:00 Download gff for
UFO05020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS27A-RA | 56..529 | 9..485 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:00 Download gff for
UFO05020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10409731..10410051 | 9..329 | 100 | -> | Plus |
2L | 10410241..10410387 | 330..476 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:31 Download gff for
UFO05020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10409731..10410051 | 9..329 | 100 | -> | Plus |
arm_2L | 10410241..10410387 | 330..476 | 100 | == | Plus |