Clone UFO05020 Report

Search the DGRC for UFO05020

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:50
Well:20
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptRpS27A-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO05020.5prime Sequence

1111 bp (1006 high quality bases) assembled on 2009-06-30

> UFO05020.5prime
CAGTCGACATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACT
CTTGAGGTCGAACCGTCGGATACTATCGAAAATGTCAAAGCCAAGATTCA
GGACAAAGAAGGAATTCCTCCAGATCAGCAGCGTCTGATCTTCGCTGGCA
AGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAACATTCAGAAGGAG
TCCACTTTGCACTTGGTGCTCCGCCTGCGTGGTGGTGCCAAGAAGCGCAA
GAAGAAGAACTACTCCACTCCCAAGAAAATCAAGCACAAGAGGAAGAAGG
TCAAGCTAGCTGTCCTGAAATACTACAAGGTTGACGAGAACGGCAAGATC
CACCGTCTCCGTCGCGAGTGCCCTGGTGAGAACTGCGGCGCCGGCGTCTT
CATGGCTGCCCACGAAGATCGTCACTACTGCGGCAAGTGCAACCTGACCT
TTGTCTTCAGCAAACCAGAGGAAAAGGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCA
TAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCT
CACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGA
TGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCT
CGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAAT
TCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAAC
CTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGC
CCATGGTGAAAACGGGGGCGAAGAGTTGTCCATATTGCCACGTTTAAATC
AAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTTC
TCAATAAACCCTTTAGGGAAATAGGCCAGTTTTCACGTACACGCCACATC
TTGCGAATTAATGTGTAGAACTGCGAATCGTCTGTATTCCCTCCGAGCGA
TGAACGTTTCAAGTGGCTCATGGAAACGGGTTACAGGTGAACTATCATTT
ACCAGTCACGC

UFO05020.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
RpS27A-RA 592 CG5271-RA 56..523 9..476 2340 100 Plus
RpL40-RB 659 CG2960-RB 123..350 9..236 705 87.8 Plus
RpL40-RA 587 CG2960-RA 65..292 9..236 705 87.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10409731..10410053 9..331 1615 100 Plus
2L 23513712 2L 10410239..10410387 328..476 745 100 Plus
2L 23513712 2L 4228025..4228252 9..236 705 87.3 Plus
X 23542271 X 6277382..6277609 235..8 585 83.8 Minus
X 23542271 X 6277610..6277837 235..8 585 83.8 Minus
3L 28110227 3L 3900848..3901075 236..9 585 83.8 Minus
X 23542271 X 6277149..6277381 240..8 580 83.3 Minus
X 23542271 X 6278294..6278521 235..8 570 83.3 Minus
X 23542271 X 6278522..6278748 235..9 565 83.3 Minus
X 23542271 X 6277838..6278065 235..8 555 82.9 Minus
X 23542271 X 6278066..6278293 235..8 555 82.9 Minus
X 23542271 X 6282957..6283184 235..8 540 82.5 Minus
X 23542271 X 6282729..6282956 235..8 510 81.6 Minus
X 23542271 X 6282501..6282728 235..8 480 80.7 Minus
X 23542271 X 6282306..6282500 202..8 450 82.1 Minus
X 23542271 X 6280764..6280882 127..9 220 79 Minus
Blast to na_te.dros performed on 2014-11-28 20:01:31 has no hits.

UFO05020.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed on 2010-08-02 18:15:58 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:31 Download gff for UFO05020.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS27A-RA 56..529 9..485 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:00 Download gff for UFO05020.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS27A-RA 56..529 9..485 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:00 Download gff for UFO05020.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10409731..10410051 9..329 100 -> Plus
2L 10410241..10410387 330..476 100 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:31 Download gff for UFO05020.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10409731..10410051 9..329 100 -> Plus
arm_2L 10410241..10410387 330..476 100 == Plus