UFO05021.5prime Sequence
1116 bp (997 high quality bases) assembled on 2009-06-30
> UFO05021.5prime
CAGTCGACATGGATTATCGTCTAGTGCTGAAAATTCTCAGCTTTCTGCTG
CTGGCCCAATTGGGTTTCTCCCAGCCGCAGCAGCAGTCGCCATCTGACTA
CGGTGAGGAGCAGCCTCCGGAGGGTTATTACGCCTTCGTCGAGTCCCCGA
ATGCGGTGCCTCCCAAGGTCAGGCCGCCACCTTACACCTTTGTAAATGCG
GAGTGCAAGGACGTGGCCGCCGGCAAGAAGTCTGCCGTGTCCGTTCACAA
CATTTGCGGAGATCTAAACAAGGGTCAGATACCCAAGAATCCGCTGGGAC
AAAATGTACTCGGGGAGCCCTATCCCTTCGAACTTATTCGCAACCAAACG
CTGAAGTTCCTTTCGAAAACTTTGCCCGTTCTAAAGGCCGACGATACCCT
ACCCAAGGTCACCCAGATCATTCGAGATGAACCCGTGGAACAGCTGGACA
GCAACAACATCGACAGGCCCTATCCCGCAGGAGGTTCCACTCGCGTCCGC
CGCAGCCTGCCGGAGGGCGTGGAGTCCAACGAGTACAGCTACTTCGATCC
CGCCCTGGACGAGGAGGAGCAACACAAGCAAAGGGATCGGAATAACCAGC
AGAGAAGGGCCGCCGAGGAGAGGAAGCCAAGGAAATTCTGCGATGGCGGT
GGAGTATTTTGCACCTTATACAGGGCAATTCAGGGAGACACCGGAGGAGC
AGCCCCTGCCACGCCCACTGCGGAAAGGCGCGAGGAGGTGGGTCCCATCC
GGTACGAGGGTCCTCCCACTCCCTGTCCCGCCAAGGTAGAGTACGCTACT
CCCGTCTTCGCTAAGAACTACCAAGGCGCCTGGCGTTATGTGGTCCAGAT
TCCCTATGAGGGCTACTTCACCCAGACGGGTGGAGGTGACGCGTTGCATT
CAGGCACGCTGTCACTACCTGGGACGGCGGTTGCTTGTCGTCACCACGCT
GGGTAGGCCTGTTGGGTGGGCGGGAGATTTTCTACCCCAATGCGGAGGAA
CACCAGTGCCCACCAGCTCGACCACCACTCAAGCCCCTTCTGGTGCAGGG
ATTCAGGCCTACAGCAGTACTGCAGAAAAGGCAGGCGTGCTACCGCTCCG
ACGACCTCGTCTGGAG
UFO05021.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:51:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spz6-RA | 1647 | CG9196-RA | 118..1225 | 9..1116 | 5100 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:51:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24758857..24759183 | 329..655 | 1635 | 100 | Plus |
| 2R | 25286936 | 2R | 24759584..24759963 | 656..1042 | 1570 | 96.1 | Plus |
| 2R | 25286936 | 2R | 24758497..24758796 | 29..328 | 1500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:51:40 has no hits.
UFO05021.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:16:00 Download gff for
UFO05021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9196-RA | 107..1223 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:35 Download gff for
UFO05021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spz6-RA | 109..1225 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:06 Download gff for
UFO05021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spz6-RA | 109..1225 | 1..1116 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:06 Download gff for
UFO05021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24758498..24758796 | 30..328 | 100 | -> | Plus |
| 2R | 24758857..24759183 | 329..655 | 100 | -> | Plus |
| 2R | 24759584..24760028 | 656..1102 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:35 Download gff for
UFO05021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20646021..20646319 | 30..328 | 100 | -> | Plus |
| arm_2R | 20646380..20646706 | 329..655 | 100 | -> | Plus |
| arm_2R | 20647107..20647551 | 656..1102 | 95 | -> | Plus |
