UFO05022.5prime Sequence
1121 bp (1015 high quality bases) assembled on 2009-06-30
> UFO05022.5prime
CAGTCGACATGAACCAGTATGGTCTGTCCGTGGTGGACGACTTCCTGGGG
ATGGAGACGGGCCTGAAGATCCTCAACGAGGTTCGAAGCATGTACAACGC
AGGAGCCTTCCAGGATGGCCAAGTGGTGACCAACCAGACGCCCGATGCAC
CCGCGGTGCGCGGTGACAAGATCCGAGGCGATAAGATCAAGTGGGTTGGT
GGCAATGAGCCGGGCTGCAGCAATGTCTGGTATCTGACCAATCAGATTGA
CTCTGTGGTGTATCGTGTTAACACGATGAAGGATAATGGCATCTTGGGCA
ACTACCACATCAGGGAGCGCACGAGGGCAATGGTCGCTTGTTATCCGGGA
TCGGGAACTCACTACGTCATGCATGTGGACAATCCCCAAAAGGATGGCCG
CGTTATAACGGCCATATACTACCTGAATATCAACTGGGATGCGCGGGAAA
GTGGCGGCATTCTGCGAATTCGGCCAACACCCGGAACCACAGTGGCGGAT
ATTGAGCCCAAGTTTGATCGCCTGATATTCTTCTGGTCTGACATTCGGAA
TCCCCACGAAGTGCAGCCCGCTCACCGTACCCGCTATGCCATCACCGTCT
GGTACTTCGATGCCAAGGAACGCGAGGAGGCCCTCATTAGGGCCAAGCTG
GAAAACAGCAAGACGAACAATCTGGCAGCTCAAGCCCAAGCCCAACAGGC
TGAACCAGACTCCACCACCACACCACCCGCAGCACCAGCTTCATCCGCAT
CCAGTCTGCCGGTTAGCATGTCCACGGGAACGGGAGCGCTGAACGCCAAT
GTGTCGAGTAATTCCTGCGCCACCAGCAGCGAAATATGCACGGCAAGCTT
TCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATA
ATCATATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCCACCAATAAAAAAACGCCCGCGGCACCGAGCGTT
CTGAACAAATCCAGATGAGTTCTTGAGTCATTACTGGATTTATCAACAGG
AGTCAGCGAGCTCGATATCAAATTACGCCCGGCCTGCCACTCATGCGAGT
ACTGTTGTGTATTCATAGCAT
UFO05022.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hph-RD | 3171 | CG44015-RD | 1125..1962 | 5..842 | 4190 | 100 | Plus |
| Hph-RC | 2496 | CG44015-RC | 1125..1962 | 5..842 | 4190 | 100 | Plus |
| Hph-RA | 2337 | CG44015-RA | 739..1576 | 5..842 | 4190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5267461..5267837 | 466..842 | 1885 | 100 | Plus |
| 3R | 32079331 | 3R | 5266792..5267032 | 5..245 | 1205 | 100 | Plus |
| 3R | 32079331 | 3R | 5267262..5267402 | 326..466 | 705 | 100 | Plus |
| 3R | 32079331 | 3R | 5267117..5267202 | 242..327 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:56:21 has no hits.
UFO05022.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:15:48 Download gff for
UFO05022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hph-RB | 296..1139 | 1..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:58 Download gff for
UFO05022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hph-RB | 296..1139 | 1..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:08 Download gff for
UFO05022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hph-RA | 736..1579 | 1..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:08 Download gff for
UFO05022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5266789..5267032 | 1..245 | 99 | -> | Plus |
| 3R | 5267121..5267201 | 246..326 | 100 | -> | Plus |
| 3R | 5267263..5267402 | 327..466 | 100 | -> | Plus |
| 3R | 5267462..5267840 | 467..846 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:58 Download gff for
UFO05022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1092843..1092923 | 246..326 | 100 | -> | Plus |
| arm_3R | 1092985..1093124 | 327..466 | 100 | -> | Plus |
| arm_3R | 1092511..1092754 | 1..245 | 99 | -> | Plus |
| arm_3R | 1093184..1093562 | 467..846 | 99 | == | Plus |
