UFO05024.5prime Sequence
1088 bp (990 high quality bases) assembled on 2009-06-30
> UFO05024.5prime
CAGTCGACATGTCTCTGGAGGATCCGTTTTTCGTGGTCAAGGACGAGGTA
TTCAAAGCTCTGAACAAAACCCGCGGCCTCTATCTGCGTTGGCGGGAGCT
GGGCGAGAACGGCGGAACGGAGGCTGAATGGACCACCACCGAGCTGCGTA
ACTCGCTACGGAGCATCGAGTGGGATCTCGAGGACCTCGAGGACACTATC
AGCATCGTTGAGAAGAATCCAAGCAAGTTTCGGATCGACAACCGCGAACT
CTCCAGCCGGCGCCACTTCATCGACAACACTCGCGATGAGGTCAAGCAGA
TGAAGGATAAGATGAGCCTGAACCGGAGCCGGGACAGAGACATCACCGCA
CACCAGCCGCTGCTCGACAACGATCGCCACAGCCCCAATCACAATCATTC
CATTGCCATACCCAATTCGAATTCCAACTCCAACGAGTACCATCAGCATC
CACACAACGATCGCACGTACCTCGTGGAGTGTCCCAACGGCAACTCGCTG
ATCAATAGCGGCAGTCAGGTGGCCAATACCATAGCTGGGACCATGTCGGC
GGCAGCGGCAGCAGCATCCCGCCACAGCGGCACCAAGTACTCCAAGCTGG
AGAACGCCCTGGACAGTCCCAGTCACTATGGGCAGACGCATCACGGCGGC
ATGGACAGTCCGAGTCATAGGTACGTGGGCGAAACAGTGTCCATACAGCA
GCGTATGATCCAGGGACAGGATGAGCAGCTAGACATGATCAGCGATTCGA
TTGGTACCCTCAAGACGGTCTCGCGGCAAATTGGCGTTGAGCTCGATGAG
CAGGCCGTCATGCTAGACGACTTTGGGAACGAGTTCGATACCACGGGAGT
CCAAGTTGGATACGACCATGAAGAAAGTTGCCCAAAGTCTTGCACATGAA
TAATGATAAACGACAGTGGGCCGCCATTCTCATCCTATCCGGACTGTTAT
TGTTTGTGAAATTTTGTTTATTATTTTGGCAGCTTTCTAGACCATTCGTT
TGGGCCGCGGCCAGTAGGTGTCATAATTCATATTCATATCATATCATATT
CACACTAGGCTAGAGAATCTGGTCATGACTGGTGACTG
UFO05024.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syx6-RD | 1982 | CG7736-RD | 390..1359 | 8..978 | 4785 | 99.7 | Plus |
| Syx6-RB | 1361 | CG7736-RB | 175..1108 | 44..978 | 4605 | 99.7 | Plus |
| Syx6-RE | 1945 | CG7736-RE | 531..1464 | 44..978 | 4605 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11220928..11221629 | 202..905 | 3420 | 99.7 | Plus |
| 2R | 25286936 | 2R | 11220464..11220621 | 44..201 | 790 | 100 | Plus |
| 2R | 25286936 | 2R | 11221783..11221857 | 905..978 | 325 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:38:27 has no hits.
UFO05024.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:15:51 Download gff for
UFO05024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx6-RD | 383..1368 | 1..987 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:50 Download gff for
UFO05024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx6-RD | 385..1370 | 1..987 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:45 Download gff for
UFO05024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx6-RD | 385..1370 | 1..987 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:45 Download gff for
UFO05024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11220318..11220358 | 1..43 | 93 | -> | Plus |
| 2R | 11220464..11220615 | 44..195 | 100 | <- | Plus |
| 2R | 11220922..11221629 | 196..905 | 99 | -> | Plus |
| 2R | 11221784..11221857 | 906..978 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:50 Download gff for
UFO05024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7107823..7107863 | 1..43 | 93 | -> | Plus |
| arm_2R | 7107969..7108120 | 44..195 | 100 | <- | Plus |
| arm_2R | 7108427..7109134 | 196..905 | 99 | -> | Plus |
| arm_2R | 7109289..7109362 | 906..978 | 98 | == | Plus |
