UFO05025.5prime Sequence
1149 bp (1040 high quality bases) assembled on 2009-06-30
> UFO05025.5prime
CAGTCGACATGCAGCCAGTTCTGGAAGTGAGCATTTACACCCTGCTGAAG
ATGGCGTTCATTTGGCAGCTGATCTCGGCGGCCATCTACCTCGTAGGACT
GCTCACCATCGGTGTGTTTCTGTACGACAACCTGAAGTCATTGGTCAGCA
TAATCAAGGCCGTCCTGGAACCCTACTTCCAGCCCCACTTGCCAAGGACA
TTGGTGGATAAGTTCGGACAGTGGGCAGTGGTGACTGGAGCCACCGATGG
CATTGGCAAGGAGTACGCCAGGGAGCTGGCTCGCCAGGGTATCAACCTGG
TGCTCATCTCGCGGACGAAGGAGAAGCTCATTGCGGTTACCAATGAGATT
GAGAGCCAGTACAAAGTGAAGACCAAGTGGATTGCAGCGGATTTCGCCAA
GGGACGTGAGGTGTACGATCAGATCGAAAAGGAACTGGCGGGCATAGACG
TTGGCATTTTGGTCAACAACGTGGGCATGATGTATGAGCACCCCGAGAGT
CTGGACCTGGTCTCAGAGGATCTTCTTTGGAACCTTCTTACCGTCAACAT
GGGATCGGTTACCATGCTCACCCGCAAGATCCTGCCCCAGATGATTGGTC
GCCGAAAGGGCGCCATTGTCAATCTGGGATCCTCCTCTGAGCTCCAGCCA
CTGCCCAACATGACCGTCTATGCTGCGAGCAAGAAGTTTGTCACCTACTT
CTCCAAGGCCCTGGAACTGGAGGTGGCGGAGCACAATATCCACGTGCAGC
TGGTGATGCCCAACTTTGTGGTGACCAAAATGAATGCCTACACCGATCGG
GTAATGCAGGGAGGTCTGTTTTTCCCGAACGCATACACTTTTGCCCGGTC
CGCCGTATTTACACTGGGAAAAACGAGCGAGACCAACGGTTTCTGGACCC
ATGGCATTCAGTATGCCATTATGAAATTGGCTCCCTGCCGATCCGCACAT
ACTTGGGACACACTGTTCAAACGACTGATATCGAGGCCTCGAGCAAAGCA
AGAAACTGAGCTTACTGCAGCTTTCTAGAACATTCGTTTGGCGCGCGGGC
CCAGGTTATTGTCATATCATAATCAATAATCCTAATCCAATCCAACTAGG
CTAGGGAATCTGGCATGACAGGCCTTGGATTCCACAATAAAAGCCGGGG
UFO05025.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13284-RD | 2178 | CG13284-RD | 227..1244 | 8..1016 | 4870 | 99 | Plus |
CG13284-RB | 1316 | CG13284-RB | 227..1244 | 8..1016 | 4870 | 99 | Plus |
CG13284-RC | 1676 | CG13284-RC | 593..1604 | 14..1016 | 4840 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16843513..16843962 | 911..462 | 2250 | 100 | Minus |
2L | 23513712 | 2L | 16846751..16846971 | 228..8 | 1105 | 100 | Minus |
2L | 23513712 | 2L | 16849410..16849778 | 896..528 | 810 | 81.3 | Minus |
2L | 23513712 | 2L | 16853968..16854336 | 896..528 | 810 | 81.3 | Minus |
2L | 23513712 | 2L | 16844679..16844803 | 351..227 | 625 | 100 | Minus |
2L | 23513712 | 2L | 16844509..16844620 | 462..351 | 560 | 100 | Minus |
2L | 23513712 | 2L | 16850158..16850282 | 351..227 | 295 | 82.4 | Minus |
2L | 23513712 | 2L | 16854716..16854840 | 351..227 | 295 | 82.4 | Minus |
2L | 23513712 | 2L | 16843325..16843397 | 978..909 | 250 | 95.9 | Minus |
2L | 23513712 | 2L | 16849984..16850093 | 462..353 | 250 | 81.8 | Minus |
2L | 23513712 | 2L | 16854542..16854651 | 462..353 | 250 | 81.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:01:47 has no hits.
UFO05025.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:16:08 Download gff for
UFO05025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13284-RB | 225..1226 | 8..1004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:41 Download gff for
UFO05025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13284-RB | 227..1228 | 8..1004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:09 Download gff for
UFO05025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13284-RB | 227..1228 | 8..1004 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:09 Download gff for
UFO05025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16843325..16843394 | 912..978 | 95 | <- | Minus |
2L | 16843513..16843961 | 463..911 | 100 | <- | Minus |
2L | 16844509..16844619 | 352..462 | 100 | <- | Minus |
2L | 16844679..16844801 | 229..351 | 100 | <- | Minus |
2L | 16846751..16846971 | 8..228 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:41 Download gff for
UFO05025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16843325..16843394 | 912..978 | 95 | <- | Minus |
arm_2L | 16843513..16843961 | 463..911 | 100 | <- | Minus |
arm_2L | 16844509..16844619 | 352..462 | 100 | <- | Minus |
arm_2L | 16844679..16844801 | 229..351 | 100 | <- | Minus |
arm_2L | 16846751..16846971 | 8..228 | 100 | | Minus |