UFO05027.5prime Sequence
1158 bp (1036 high quality bases) assembled on 2009-06-30
> UFO05027.5prime
CAGTCGACATGGAGAACACCACAATGCTGGCTAATATTAGCCTAAATGCA
ACCAGAAATGAGGAGAATATCACCTCATTCTTCACCGACGAAGAGTGGCT
GGCCATCAATGGCACTTTGCCGTGGATAGTGGGATTCTTCTTCGGCGTCA
TCGCCATCACGGGATTCTTCGGCAACCTGCTGGTCATCCTGGTGGTGGTC
TTCAACAACAACATGCGCTCCACCACCAACCTGATGATTGTCAATCTGGC
TGCCGCTGATCTGATGTTCGTAATCCTCTGCATTCCCTTCACGGCCACCG
ATTACATGGTGTACTACTGGCCATATGGAAGGTTCTGGTGCCGCAGTGTC
CAGTACCTGATTGTGGTGACCGCCTTCGCCTCCATTTACACGCTGGTGCT
GATGTCCATCGATCGGTTCCTGGCGGTGGTTCATCCCATTCGCTCGCGGA
TGATGAGGACGGAGAACATTACCCTGATTGCCATCGTGACTCTGTGGATC
GTGGTGCTGGTCGTTTCGGTGCCAGTGGCCTTCACCCACGACGTGGTGGT
GGATTACGATGCAAAGAAGAACATCACCTACGGCATGTGCACCTTCACGA
CGAACGACTTCCTTGGTCCGCGCACCTACCAGGTCACCTTCTTCATCAGC
TCCTACCTGCTGCCCCTGATGATCATCAGCGGTCTCTACATGCGCATGAT
CATGCGGCTCTGGCGCCAGGGAACCGGCGTCCGCATGTCCAAGGAGTCGC
AGCGCGGTCGCAAGCGGGTCACCCGACTCGTCGTCGTGGTGGTCATCGCC
TTCGCCTCGCTCTGGCTGCCTGTCCAGCTCATCCTGCTGCTCAAGTCACT
GGATGTCATCGAGACGAACACCCTCACCAAGCTAGTCATCCAGGTCACCG
CCCAGACTCTGGCCTACAGCAGCTCGTGTATCATTCCGCTGCTCTACGCC
TTCTCTCCGAGAATTTCCGGAGGCCTTCTACAAGGCCGTTAACTGCTCCT
TCTCGATACAGAACTACACATCTGATTTGCCGCCGCCGCGCAGACGTCCT
GTGCAGGACCTCCACCACTGGACTCGCAGCTTCTAAACATTCGTTGGCGC
GCGGCCCAGTAATGGCTAATCTATCAATCTATCTATCCATATAGCTAGGA
TCTGGCTA
UFO05027.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AstA-R2-RC | 1994 | CG10001-RC | 756..1828 | 7..1075 | 5205 | 99.3 | Plus |
| AstA-R2-RA | 2273 | CG10001-RA | 756..1828 | 7..1075 | 5205 | 99.3 | Plus |
| AstA-R2-RB | 2077 | CG10001-RB | 756..1736 | 7..985 | 4840 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28743484..28744027 | 550..7 | 2720 | 100 | Minus |
| 3R | 32079331 | 3R | 28740706..28740985 | 827..548 | 1400 | 100 | Minus |
| 3R | 32079331 | 3R | 28740471..28740633 | 985..825 | 700 | 98.2 | Minus |
| 3R | 32079331 | 3R | 28737554..28737648 | 1075..983 | 280 | 95.8 | Minus |
| X | 23542271 | X | 3655852..3655904 | 385..437 | 190 | 90.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:51:56 has no hits.
UFO05027.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:16:10 Download gff for
UFO05027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AR-2-RA | 101..1187 | 1..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:16:36 Download gff for
UFO05027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AR-2-RA | 750..1836 | 1..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:12 Download gff for
UFO05027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AstA-R2-RA | 750..1836 | 1..1083 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:12 Download gff for
UFO05027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28740706..28740984 | 549..827 | 100 | <- | Minus |
| 3R | 28737546..28737646 | 985..1083 | 92 | <- | Minus |
| 3R | 28740472..28740630 | 828..984 | 98 | <- | Minus |
| 3R | 28743486..28744032 | 1..548 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:16:36 Download gff for
UFO05027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24563268..24563368 | 985..1083 | 92 | <- | Minus |
| arm_3R | 24566194..24566352 | 828..984 | 98 | <- | Minus |
| arm_3R | 24566428..24566706 | 549..827 | 100 | <- | Minus |
| arm_3R | 24569208..24569754 | 1..548 | 99 | | Minus |
