UFO05028.5prime Sequence
457 bp (335 high quality bases) assembled on 2009-06-30
> UFO05028.5prime
CAGTCGACATGGAGGACATCTTGGGCGTGCTGGGCTCGCTTTCGGACCTG
CGCAGGGAGCTCGAGGTCCTGCGCAAGGCCCACTTTGAGGAGCTGGACCA
CCTCTTCTACGGCACAGGCCAGCCGGAGGCGGAGGCCAAACCGAGGGACA
GTGCTCCGGCAGCGAAGAGTCAGGAGAACTCTTCGGTGACGCCGCAGCAA
ACGAAAAAGCGCCCCAAGCGACTCACCTCACTGGCCGAGGATCAGAATGA
GCCCGAGGCTCCAGACGCCACGGCCAACAACACGTCGGCCCGTCAAAGCA
CTCGGGGTCAGCAACTCCCAGTTGCTGGGCTAATCGCCCGAGGGACGAGC
ACAACTCCACGGCCTCGCTGATGCCCCCCTCCGCCTGGTGCCCGTCTCGG
CGGAAACCACCTTCGCTTCCGGAGGGCCAAGCGAGCCGCTAGCTGAAGAC
GAAAAAT
UFO05028.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Incenp-RB | 2459 | CG12165-RB | 124..560 | 9..450 | 1905 | 96.6 | Plus |
Incenp-RC | 2595 | CG12165-RC | 263..699 | 9..450 | 1905 | 96.6 | Plus |
Incenp-RA | 2699 | CG12165-RA | 124..560 | 9..450 | 1905 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7278859..7279041 | 76..258 | 915 | 100 | Plus |
2R | 25286936 | 2R | 7279106..7279283 | 258..441 | 445 | 90.3 | Plus |
2R | 25286936 | 2R | 7278729..7278798 | 9..78 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:02:02 has no hits.
UFO05028.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:16:11 Download gff for
UFO05028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Incenp-RA | 255..707 | 1..457 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:51 Download gff for
UFO05028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Incenp-RA | 255..707 | 1..457 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:17 Download gff for
UFO05028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Incenp-RA | 116..568 | 1..457 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:17 Download gff for
UFO05028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7278721..7278797 | 1..77 | 94 | -> | Plus |
2R | 7278861..7279041 | 78..258 | 100 | -> | Plus |
2R | 7279107..7279301 | 259..457 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:51 Download gff for
UFO05028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3166226..3166302 | 1..77 | 94 | -> | Plus |
arm_2R | 3166366..3166546 | 78..258 | 100 | -> | Plus |
arm_2R | 3166612..3166806 | 259..457 | 91 | | Plus |