Clone UFO05028 Report

Search the DGRC for UFO05028

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:50
Well:28
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptIncenp-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO05028.5prime Sequence

457 bp (335 high quality bases) assembled on 2009-06-30

> UFO05028.5prime
CAGTCGACATGGAGGACATCTTGGGCGTGCTGGGCTCGCTTTCGGACCTG
CGCAGGGAGCTCGAGGTCCTGCGCAAGGCCCACTTTGAGGAGCTGGACCA
CCTCTTCTACGGCACAGGCCAGCCGGAGGCGGAGGCCAAACCGAGGGACA
GTGCTCCGGCAGCGAAGAGTCAGGAGAACTCTTCGGTGACGCCGCAGCAA
ACGAAAAAGCGCCCCAAGCGACTCACCTCACTGGCCGAGGATCAGAATGA
GCCCGAGGCTCCAGACGCCACGGCCAACAACACGTCGGCCCGTCAAAGCA
CTCGGGGTCAGCAACTCCCAGTTGCTGGGCTAATCGCCCGAGGGACGAGC
ACAACTCCACGGCCTCGCTGATGCCCCCCTCCGCCTGGTGCCCGTCTCGG
CGGAAACCACCTTCGCTTCCGGAGGGCCAAGCGAGCCGCTAGCTGAAGAC
GAAAAAT

UFO05028.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
Incenp-RB 2459 CG12165-RB 124..560 9..450 1905 96.6 Plus
Incenp-RC 2595 CG12165-RC 263..699 9..450 1905 96.6 Plus
Incenp-RA 2699 CG12165-RA 124..560 9..450 1905 96.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7278859..7279041 76..258 915 100 Plus
2R 25286936 2R 7279106..7279283 258..441 445 90.3 Plus
2R 25286936 2R 7278729..7278798 9..78 350 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:02:02 has no hits.

UFO05028.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:16:11 Download gff for UFO05028.5prime
Subject Subject Range Query Range Percent Splice Strand
Incenp-RA 255..707 1..457 95   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:51 Download gff for UFO05028.5prime
Subject Subject Range Query Range Percent Splice Strand
Incenp-RA 255..707 1..457 95   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:17 Download gff for UFO05028.5prime
Subject Subject Range Query Range Percent Splice Strand
Incenp-RA 116..568 1..457 95   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:17 Download gff for UFO05028.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7278721..7278797 1..77 94 -> Plus
2R 7278861..7279041 78..258 100 -> Plus
2R 7279107..7279301 259..457 91   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:51 Download gff for UFO05028.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3166226..3166302 1..77 94 -> Plus
arm_2R 3166366..3166546 78..258 100 -> Plus
arm_2R 3166612..3166806 259..457 91   Plus