UFO05034.5prime Sequence
774 bp (107 high quality bases) assembled on 2009-06-30
> UFO05034.5prime
CAATCCACATGCTGAAGTTCTGCTCGCTGCGAAGGAGCAAGGAGCCAGCA
ATTGTGGCTCCCAGAGTGGCCAAAAGTTCATCGCTGCGCCTGAAGGATGT
CCCGCTGAATGACGCCCCACTGGTCCTGGTGCTCCATGCCCAGCGGGAGC
GAGGAGCTCTGATTTTGGCCCTGAGCATTGCCAAGAATTCTTTGTTTCCT
TGCCGGAAGTGCGGAACCCCCTACTAAAACCGTCAGGTGGTCGAAAACGG
AACAACCCCCCGTCCGTCGTACAATAGCAACGGATACTTCTCAGAGCCCG
AGCCCAACTACGATTCGGATTACTCGGCGGTGAGGTACCGGACCCAAAAT
CCGCACCGCGTTCAGTCCGTCTCCGCGGCTGTCAATGTGCGCAACCTTAA
TCGGGACAAGAAGTTGTATGGTACTATGCCAAATCCCATAAAATCAGCGC
AAAACTCGTATAAAAATCAACCAGGTCGCATCGGAAACTATACGACAGGT
CATTCGTCTGTTTCCGAAAAGGAAAAGAAGGAGTGGTGGGACGAAGTGAT
GGACATCTTTAATGGGAATCTACAACAATCAAAACTATCGCCATTGAACA
CTGAGAGTATCTTGTCCAGAGCTTTGGCCAAGGAATCCGGCTATACTATC
GATTCCAATCTGGTCTTCGGTAAGAAAGATGTACCCGTGAGCAGTCCCCT
TAGCCGCGATGAACAAAAGCTAGCTTACAATAGTCTCCGGGCAGGGGGAG
AGCCACCTCTGCTCGGCTTCCGTA
UFO05034.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CAP-RI | 2663 | CG18408-RI | 31..798 | 7..774 | 3120 | 93.8 | Plus |
| CAP-RY | 8546 | CG18408-RY | 6166..6681 | 259..774 | 2160 | 94.6 | Plus |
| CAP-RV | 8693 | CG18408-RV | 6313..6828 | 259..774 | 2160 | 94.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10294612..10294767 | 259..414 | 660 | 94.9 | Plus |
| 2R | 25286936 | 2R | 10295866..10296023 | 617..774 | 640 | 93.7 | Plus |
| 2R | 25286936 | 2R | 10294846..10294966 | 413..533 | 560 | 97.5 | Plus |
| 2R | 25286936 | 2R | 10269262..10269361 | 78..177 | 425 | 95 | Plus |
| 2R | 25286936 | 2R | 10269046..10269116 | 7..77 | 310 | 95.8 | Plus |
| 2R | 25286936 | 2R | 10269442..10269499 | 199..256 | 275 | 98.3 | Plus |
| 2R | 25286936 | 2R | 10295741..10295794 | 566..619 | 180 | 88.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:17:23 has no hits.
UFO05034.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:16:01 Download gff for
UFO05034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CAP-RI | 19..790 | 1..773 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:02 Download gff for
UFO05034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CAP-RI | 26..797 | 1..773 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:53 Download gff for
UFO05034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CAP-RI | 26..797 | 1..773 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:53 Download gff for
UFO05034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10269041..10269116 | 1..77 | 92 | -> | Plus |
| 2R | 10269262..10269362 | 78..178 | 94 | -> | Plus |
| 2R | 10269422..10269501 | 179..258 | 86 | -> | Plus |
| 2R | 10294612..10294765 | 259..412 | 94 | -> | Plus |
| 2R | 10294846..10294966 | 413..533 | 97 | -> | Plus |
| 2R | 10295291..10295323 | 534..566 | 96 | -> | Plus |
| 2R | 10295742..10295794 | 567..619 | 88 | -> | Plus |
| 2R | 10295869..10296022 | 620..773 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:02 Download gff for
UFO05034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6156546..6156621 | 1..77 | 92 | -> | Plus |
| arm_2R | 6156767..6156867 | 78..178 | 94 | -> | Plus |
| arm_2R | 6156927..6157006 | 179..258 | 86 | -> | Plus |
| arm_2R | 6182117..6182270 | 259..412 | 94 | -> | Plus |
| arm_2R | 6182351..6182471 | 413..533 | 97 | -> | Plus |
| arm_2R | 6182796..6182828 | 534..566 | 96 | -> | Plus |
| arm_2R | 6183247..6183299 | 567..619 | 88 | -> | Plus |
| arm_2R | 6183374..6183527 | 620..773 | 93 | | Plus |
