UFO05035.5prime Sequence
1148 bp (1021 high quality bases) assembled on 2009-06-30
> UFO05035.5prime
CAGTCGACATGAGTGGATACACGGACCTCACCAAGCTGGAGACAAGTCGA
AACTGCCTGCGCCGCATCGCCCGTCACGATGAGCAGCAGTTCTCCAAAGA
CAGCATTGTCAATGTGATGGAAAAGTTTGTAAAGACTGTCAACATTATGG
ACGACACCATACTGGTGCCATGCAGGCTCATGGATCGGCAGATCGGCGAC
AGCACTGACATCATCCCAGCAACCGGCAAGGACTCGACCGCCAACCAGCT
GACACAGACCTCCAGTGCCCACGGCAAGCGGGGAGCGGCGCATTCAAAAA
ATGTCCAAGACTTTCTCAGCGCCTCCGAGCTGTTCAATCTGTACAACATG
CTGAACTCCCTGAAAAAAGATCTGCTTTGGACCGCCAACCAGGAGGACGA
CGACCAGCAGCACTCCGAACAGCAGCTCAACGCCAGTACCAGTTCCACTT
CGAGCTGCAATCCCAGCGAGAGCAAGACTGAATTCAACAGCGGCAGTCCA
AGCACAACCGCATCCGGAAGTGTCAAGGGTCATGTGCGCCGTACCTCTAC
CGCATCCATGATGTCCACCAACTCGGTGAGCAACATGAGTGACTCTGACT
CGGACATATCGCAGGAAAACGACTCGGGGCTAGAGTCCGATGGCAACAAG
AGCGACAACGCCCAAAGCAGCGACGGCAGCGACATTGTAGACGTCGCCAA
ATCGAAGCCGGGCTCGGGGGACAAGGCCACGGAGCTGGCCAAGCGCTGCC
GGAGGCATCTTAACGGTCTGTACCAGTGCCTGGAACAAATGACAGAGGCG
GCCAACTACCTGACCGCCAGATACCAAAGTGATATTGGGCCCGTCGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGATTCTCACAATAAAAAAACGCCCGGCGGCACCGAGCG
TTCTGAACAATCAGATGGGAGTTCTGAGGTCATTACTGGATCTATCACAG
GAGTCCAGCGAGCTCGAATATCCATACGCCCCGCCTGCCACTCATCGCGA
AGAACTGTTTGAATCATAGCATGCTGCCACTGAAGCATCACACAACGG
UFO05035.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2765-RF | 2310 | CG2765-RF | 457..1301 | 1..845 | 4195 | 99.8 | Plus |
| CG2765-RD | 2648 | CG2765-RD | 843..1639 | 49..845 | 3985 | 100 | Plus |
| CG2765-RE | 2072 | CG2765-RE | 267..1063 | 49..845 | 3985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24960850..24961506 | 845..189 | 3285 | 100 | Minus |
| 2R | 25286936 | 2R | 24961606..24961748 | 191..49 | 715 | 100 | Minus |
| 2R | 25286936 | 2R | 24964572..24964620 | 49..1 | 215 | 95.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:37:33 has no hits.
UFO05035.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:16:03 Download gff for
UFO05035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2765-RA | 464..1308 | 1..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:09 Download gff for
UFO05035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2765-RF | 457..1301 | 1..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:16 Download gff for
UFO05035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2765-RF | 457..1301 | 1..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:16 Download gff for
UFO05035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24960850..24961503 | 192..845 | 100 | <- | Minus |
| 2R | 24961606..24961747 | 50..191 | 100 | <- | Minus |
| 2R | 24964572..24964620 | 1..49 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:09 Download gff for
UFO05035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20848373..20849026 | 192..845 | 100 | <- | Minus |
| arm_2R | 20849129..20849270 | 50..191 | 100 | <- | Minus |
| arm_2R | 20852095..20852143 | 1..49 | 96 | | Minus |
