UFO05042.5prime Sequence
1104 bp (993 high quality bases) assembled on 2009-06-30
> UFO05042.5prime
CAGTCGACATGCACACGCAGTTGGCAGACGAGTCGTACCGCGTGGGGGAA
GCTGCCTCCTCGGCTTCCTATCTTCGCGGTGAACGCATCCTGGACATAGC
CAAGCGTTCGGGCGCCCAGGCCATCCACCCAGGCTACGGCTTCCTCTCCG
AGTCCGTCGAGTTTGCCGAGTTGTGCCAGCGTGAGGGCATCATCTTCATG
GGTCCGCCCAGTTCCGCCATCCGGGACATGGGGATTAAGAGCACCAGCAA
GGCCATAATGGCCGCTGCTGGGGTGCCGATCATCAATGGATACCATGGCG
ATGATCAGTCAGATGAGTGTTTGCAGCGAGAAGCCGACAAAATTGGCTTT
CCCTTGATGATTAAAGCCGTCCGCGGCGGCGGAGGCAAAGGCATGAGAAT
CGCAGAAAAACCGGACGACTTCCTCACCGCTCTGAACTCAGCTCGCACCG
AGTCCGAGAAGTCGTTTGGCGACAGCTCTGTGCTTCTGGAGCGGTACGTC
CGATCTCCACGCCACGTAGAGGTTCAAGTATTTGCGGATCAGTATGGTGA
TGCTGTCTATCTGTGGGAAAGAGATTGCTCCGTGCAAAGACGTCATCAAA
AGATTATTGAAGAGGCGCCAGCTCCAGGTTTGTCGGAAGATTTGCGTCGT
GAGCTGGGCGAGGCTGCTGTTCGTGCAGCGAAAGCTGTGGGCTACGTAGG
AGCTGGCACCGTGGAGTTCATTCTAGACAAAGAAGATCTCTCTTTCCACT
TCATGGAAATGAATACCCGCCTGCAGGTGGAGCATCCTATAACGGAAATG
ATTACGGGCACCGATTTGGTTGAATGGCAGATTCGCATTGCCGCCGGTGA
GCCATTACCCCTGAAGCAATCTGAGATTACGCGGCGTGCCCCGCATTTGA
AGCTCGCATTTATGCAGAAAATCCTCGCGGAGCTTTCTGCCCGGAGCCGG
ACCCCTGCGGATATTTTCTACTCCCCACCATCAACACGTTCGCGTGGAGA
CGGTGTCGAGAAGAAAATGAGTGTCTGTGCACTACGACCATGATGCAAGC
TAGTCGTTGGGGGCGAACCGCACCAGCCTACTCATGATGCCGCCTGGGTG
AATA
UFO05042.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:54:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2118-RD | 2166 | CG2118-RD | 81..1152 | 8..1067 | 4965 | 98.3 | Plus |
| CG2118-RC | 2920 | CG2118-RC | 481..1552 | 8..1067 | 4965 | 98.3 | Plus |
| CG2118-RB | 2297 | CG2118-RB | 212..1283 | 8..1067 | 4965 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:54:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31792705..31793320 | 623..8 | 3080 | 100 | Minus |
| 3R | 32079331 | 3R | 31792227..31792650 | 1039..624 | 1620 | 96 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:54:39 has no hits.
UFO05042.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:16:23 Download gff for
UFO05042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RB | 202..1328 | 1..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:24 Download gff for
UFO05042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RB | 203..1329 | 1..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:32 Download gff for
UFO05042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RB | 203..1329 | 1..1103 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:32 Download gff for
UFO05042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31792149..31792650 | 624..1103 | 94 | <- | Minus |
| 3R | 31792705..31793324 | 1..623 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:24 Download gff for
UFO05042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27617871..27618372 | 624..1103 | 94 | <- | Minus |
| arm_3R | 27618427..27619046 | 1..623 | 99 | | Minus |
