UFO05043.5prime Sequence
1117 bp (1014 high quality bases) assembled on 2009-06-30
> UFO05043.5prime
CAGTCGACATGCGTTTTGAGCCTCTGGGCCAGAAAATGTTCACCCGCCGC
AATTGGTTGTTGCGCTGCAGCATCCTTATCAATGTGGCGGTGATCCTGTA
CATTGGCAGTCAATTGATGATCGGCGGCGGCAACAACTTCTCGAACGGCG
GTGGCTTCCTGCTGCAGGAGCAGCAACAGGTGTCAATGATGCAAGTGGGC
TCCGCCTCATCAGCGGCCCAGGTGCAGCAGCAACAGCAGCCCACTCCCAA
GAACCAGAACCAGGTGGCCGAGATCTTCGAGTCCGAGGAAAAGCAGCTGG
TCAATGCCAACGCAGATCCTCCAGCAGCAGCGGCTCAGGTGGCTGATGGC
GGTGCTGGAGCCCCGCAGTTGGCGAACGATAGTGGTGCCGGGGCGGCTGC
TCTGGGCGATCCCTCCCAGGTGATAGGAAACATTGGGCCCGGCGGTGTCG
CCGAGGTGAACAATAGCCAGTCTGACGGCGGCTACATAGTCACAGGCGAT
GAGAAGGAGCTGGAGGAGCGTGTGCGATCGTTGATCAACTGCTTCGACCA
CGACTACCACCAACAGACCTTGCAGCGTGGCGACTTCTGGGTGCTGCAGA
ACTACGTGCGGGCGGAGCATGGCGACATCAAGTGCCATGAGTCGATCACC
TACACCACGCACGCGGACTACACGTTCCTGGACAACCTGGTGCCGCTGTT
GGAGCGCTGGAACGCCCCGGTGAGCATTGCCATGCACGCGCCCGGCACGG
ACTTCCAGCCCACTCTGGACTCGATCCGGTATCTGCGAGAGTGTCTGCCC
GGCAGTCACCTGGTGCGCGCCTATACCACCTTCCACATCTACTTCGGAAC
AAGCACATTCCTAAGTCTGTGCCCAAGCCTCACGAAGTCTTCAAGACAGG
ATACACTGCACACTCCACCTCCGTACTTCACGTCAGCTCCGGCACCTGTA
CAAGCGCAAAAGAAGTTGCTGTATCCGGTGACGTTGTCGTACATTGCCGC
GACTCGCACTCACCCACTTTTTCTGGCTCGACATCGGCTGATCGAACCCG
GTCTGTTCAGAGTTCTCGAAATGAATGCTCGCACGACAGTACTGAAGCAA
GGATCTAGATTTCATGG
UFO05043.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9171-RG | 3950 | CG9171-RG | 590..1699 | 7..1093 | 4915 | 97.6 | Plus |
| CG9171-RF | 3736 | CG9171-RF | 376..1485 | 7..1093 | 4915 | 97.6 | Plus |
| CG9171-RE | 3129 | CG9171-RE | 430..1539 | 7..1093 | 4915 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5770162..5770888 | 981..261 | 3320 | 99 | Minus |
| 2L | 23513712 | 2L | 5770951..5771204 | 260..7 | 1270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:02:17 has no hits.
UFO05043.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:16:24 Download gff for
UFO05043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9171-RB | 322..1379 | 1..1043 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:01 Download gff for
UFO05043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9171-RE | 425..1482 | 1..1043 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:23 Download gff for
UFO05043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9171-RE | 425..1482 | 1..1043 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:23 Download gff for
UFO05043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5770090..5770888 | 261..1043 | 97 | <- | Minus |
| 2L | 5770951..5771212 | 1..260 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:01 Download gff for
UFO05043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5770090..5770888 | 261..1043 | 97 | <- | Minus |
| arm_2L | 5770951..5771212 | 1..260 | 98 | | Minus |
