UFO05044.5prime Sequence
1185 bp (1047 high quality bases) assembled on 2009-06-30
> UFO05044.5prime
CAGTCGACATGGGTGAAGAAACTATTAACTCAACGCAAAACAAAACCAGA
ACGAAAACTACGCGACCGAAGGCAGTGTACCTGTGGACAGTTAGCGATGT
GCTCAAGTGGTATCGCCGCCACTGCGGTGAATACACCCAGTATGAGCAGC
TCTTCGCCCAGCACGATATAACCGGAAGGGCTCTACTCCGGATCACAGAC
TCCTCACTGCAAAGAATGGGCGTGACGGACAACCGGGATCGGGAAGCCAT
TTGGCGGGAGATCGTTAAGCAGCGACTGAAGACGGATATCATGGAAATCC
GGGATATGGAAAGGCTCAATATTTACGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCA
TAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCT
CACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGA
TGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCT
CGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAAT
TCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAAC
CTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGC
CCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAA
TCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATT
CTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCA
CATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGTATTCAC
TCCAGAGCGATGAAACGTTTCAGTTTGCTCATGGAAACCGGTGTACAGGG
TGACACTATCCCATATCACCAGCTCACCGTCTTTTCATTGCCATACGAAA
TTCCGGATGAGCATTCATCAGGCGGGCAGAATGGTGAATAAAGCCGGATA
AAACTTGGTGCTTATTTTTCTTTACGTCTTTAAAAGCCGTAAATCAGCTG
AACGTTGGTTAGTACTGACACTGACTGAAATGCTAATGTTCTTACATGCA
TGGATCAGTCACGGGCATTCAGGATTTTTCCCATT
UFO05044.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ave-RA | 546 | CG30476-RA | 70..387 | 9..326 | 1590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14752943..14753110 | 159..326 | 840 | 100 | Plus |
| 2R | 25286936 | 2R | 14752590..14752742 | 9..161 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:52:02 has no hits.
UFO05044.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:16:25 Download gff for
UFO05044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ave-RA | 58..382 | 1..326 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:16:41 Download gff for
UFO05044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ave-RA | 63..387 | 1..326 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:16 Download gff for
UFO05044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ave-RA | 63..387 | 1..326 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:16 Download gff for
UFO05044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14752583..14752742 | 1..161 | 97 | -> | Plus |
| 2R | 14752946..14753110 | 162..326 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:16:41 Download gff for
UFO05044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10640451..10640615 | 162..326 | 100 | == | Plus |
| arm_2R | 10640088..10640247 | 1..161 | 97 | -> | Plus |
