UFO05045.5prime Sequence
1077 bp (996 high quality bases) assembled on 2009-06-30
> UFO05045.5prime
CAGTCGACATGAATCGGCAGGCGAAATTCCTAATCTTGTGCCTCTTTGTG
GGCCTCTTCTCCGCGAATTTGTGCGAAGAAGTGACCACACCGGCTCCAGC
GGACACCACCACCCAGGAATCCAAGAACACCACCACTCCGCCGGACACCA
CCACTACTGTGACGCCACCGTCGACCTCAACCACGAGCACCACAACTGAA
AAGACCACGACGACGCCACCAATTACCACATCGACTGAGAAGACCACAAC
TTCCACTACTCCAGCCAGCACCACCAGCAGCACCACTCCGGCCAGCACCA
CCAGCAGCACCACTCCGGCAACGACCACCACCACGCCTGGAACTACATCT
ACGACCACTCCGTCTCCGAACTCGACCACAACTACGCCGCCGCCACACAC
ATCAACCACTCCGGCGCCGAAGCCCGTGCCGTGCGGTCATTTCGATGGAT
CCTCGTTCATTGGCGGCATTGTGCTGACTCTGGGCCTGCTCGCTATCGGC
TTAGTGGCCTACAAGTTCTACAAGGCCCGCAACGAGCGCAACTACCACAC
CCTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGA
TCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCG
GCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTG
GATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCC
CTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACAT
GGAAGCCATCACAAACGGCATGATGAAACCTGAATCGCCAGCGGCATCAG
CACTTGTCGCCTTGCGTATATATTTGCCATGGTGAAAACGGGGCGAAGAG
TGTCCATATTGCCACGTTTAATCAAAACTGTGAACTCACCCAGGATGCTG
AACGAAAACTATCTCATAACTTAAGATAGCAGTTTCACGTACCGCAATCT
GCATATTGGTGACTGCGATCGTCTGAT
UFO05045.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:51:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vsg-RE | 2164 | CG16707-RE | 122..667 | 9..554 | 2730 | 100 | Plus |
| vsg-RB | 2164 | CG16707-RB | 122..667 | 9..554 | 2730 | 100 | Plus |
| vsg-RA | 2270 | CG16707-RA | 228..773 | 9..554 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:51:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9715745..9716219 | 80..554 | 2375 | 100 | Plus |
| 3L | 28110227 | 3L | 9714551..9714623 | 9..81 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:51:50 has no hits.
UFO05045.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:16:27 Download gff for
UFO05045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vsg-RA | 224..782 | 1..560 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:42 Download gff for
UFO05045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vsg-RA | 220..778 | 1..560 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:10 Download gff for
UFO05045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vsg-RA | 220..778 | 1..560 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:10 Download gff for
UFO05045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9714543..9714623 | 1..81 | 95 | -> | Plus |
| 3L | 9715747..9716224 | 82..560 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:42 Download gff for
UFO05045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9707643..9707723 | 1..81 | 95 | -> | Plus |
| arm_3L | 9708847..9709324 | 82..560 | 99 | == | Plus |
