UFO05046.5prime Sequence
1145 bp (1017 high quality bases) assembled on 2009-06-30
> UFO05046.5prime
CAGTCGACATGGATCAGGATCACTTAAAGAATGCTAAAAACGCCACGCGG
AGAGTTGGTCGTTTGCGGTCGCTGGGAATCGTTACAGTCGGAGGAGCTGC
CTTGGTGGCGGGCATTACGGCATACAAGAACCAGGACCAGTTGTTCCGGA
CCTTCGTGATGCCAGCGGTGCGACTTCTTCCGGCGGAAGCCAGCCATCAA
CTGGCCGTGCTGGCGTGCAAGTACCGCCTGTGCCCGGTTTCACAGTACCA
TGATGACCAGAACTTGCACACGTCGTTCTTTGGCCGGATGCTTAGCAATC
CCATTGGCATTGCAGCGGGATTCGATAAGAACGCGGAGGCGGTGGACGGC
CTGCAGGATCTAGGATTCGGATTTATAGAGGTGGGCACAGTTACCCCGGC
GGCTCAGGAGGGCAATCCCAAGCCGAGAGTATTCCGGTTGACCGAGGACA
AGGCCATCATTAATCGGTACGGATTTAATAGCGACGGGCATCAGGCCGTG
CTCCAACGGCTGCGCTTGCTCCGCAAAAAGGAGAACTTCAATGGAGTTGT
GGGCGTGAATCTGGGCCGGAACAAGACCACCATGAGCCCGATAGCGGATT
ATGTACAGGGTGTTCGGGTTTTCGGGCCCGTAGCAGACTACCTGGTCATT
AATGTGAGCAGTCCGAACACCAAGGGCCTGCGCGATATGCAGAGCAAGGA
GAAGCTAAGAGAGCTCCTGGAACAGGTCAACGACACGAAATCCTCCCTGG
ATAAGAACAAGAATGTGCCTATACTCTTGAAACTTTCGCCGGATCTATCT
TTGGACGACATGAAAGGACATCGTGTGGGTAATCAAGCGCAAGAAGAGCC
GCGTGGATGGGCCTGATCGTTTCAAACACCACGGGTGTCGCGGGAAAACA
TCGAAAAGAACAAGCTGGGCGAGGAAACTGGGCGGAATAAGTGGTCCTCC
CCCTCAAGGCCGCTTCCACAGAGATGATCGCCCAGATGTACCAGCTCACC
GATGGAAAGATTCCCATCATAGCCGTCGGCGGAGTGCTTCCGGCTATGAT
GCATACGAAAGATCGAGCTGGAGCTCCTACGTCCAATCTACCCCGCTTTA
TGTACGAGGACCGCCTCTGGGAGACTAGCGAACCTTCGGCCTGAT
UFO05046.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dhod-RD | 1472 | CG9741-RD | 126..1234 | 2..1109 | 5145 | 98.2 | Plus |
| Dhod-RA | 1355 | CG9741-RA | 9..1117 | 2..1109 | 5145 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8651683..8652682 | 1060..57 | 4620 | 98.7 | Minus |
| 3R | 32079331 | 3R | 8652736..8652791 | 57..2 | 265 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:58:28 has no hits.
UFO05046.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:16:14 Download gff for
UFO05046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhod-RD | 125..1238 | 1..1112 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:52 Download gff for
UFO05046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhod-RA | 8..1121 | 1..1112 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:27 Download gff for
UFO05046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhod-RA | 8..1121 | 1..1112 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:27 Download gff for
UFO05046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8651683..8652682 | 57..1060 | 98 | <- | Minus |
| 3R | 8652737..8652791 | 1..56 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:52 Download gff for
UFO05046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4477405..4478404 | 57..1060 | 98 | <- | Minus |
| arm_3R | 4478459..4478513 | 1..56 | 96 | | Minus |
