UFO05050.5prime Sequence
1134 bp (978 high quality bases) assembled on 2009-06-30
> UFO05050.5prime
CAGTCGACATGGCAGCCAGCGAAGCGCCACCCGCAGACCCGGCGGTGGAG
GTGGCGCCACCAGCGAAGGACTCGGAAGACGTCACTCTGGACGCCATCCT
GAAGCACCTGGGGCAGTTCGGACGCTTCCAGCTGATCATATTCCTCCTAA
TCTGCCTGCCGATGATGTTCCACGCCATGTTCTCGGTCACATACGTGTTT
ACCGCTGCCACAGTGACGCACAGATGTAGCGTGGAAGAGTGCGATTTGCC
TGGAAGCAACTACTACGAGCCACACACCAATTGGAGTATCCCCAAGAACG
GCAAGGATCTGGACTCCTGTAATCGGTACACCAACTCGGAGCTGCCCCAG
TGGAACCATTCTGTGGACATTTGCTCGGCCGACCACTTCACAAAAAACAA
GGAGGCCTGCGCCCACAACGAGTTCGTTTTTCGCGACGATGAAGTTACCA
TTTCCAATGACTTTGGCATTTTCTGCGATGATGAATGGAAGCTATCTATG
GTGGGAACCATAAACAACTTGGGACAATTCTTCGGCATTCCCATCGGGGG
CTTTGTGGCGGATCGATATGGACGGAGTTTCTCAATCGCTCTCGGCGGAA
TATTGGGAGCCGTGCTTGGCGTAATTCGCTCCTTCTCGCCCAGCTACGGT
TGGTTCCTTGTGTTCGAGTTCCTGGACAACATGACCAGCAGTACGTTGTA
CTCCACCTGTTTCGTGATCGGGATCGAGCTAGTGGGACCCAAGCGACGCG
TGCTGGCGTGCAGTGTGATTACGGTCTTTTACGCGGTGGGTGAGGTGCTG
CTCGCGATGTCCGCCAAGGCGTTCCACGATTGGCGGATCCTACTGCGCAT
CACGTACGGGCCCTCGCTGATCTTGCTGGCCTACTTTTGGATCCTGCCCG
GGAAGTGGTGCGCTGGCTGCTTAGTCAGGGCAAGGAGGAGCGGGCCAAGA
ATATCCTTCGCGAGCCGCCCATGTGAACAGCGCGAGCTGCCGGAGAGCGT
GCTGGACAAGCTTGGTGCTGGCCAATCGGGACAAGTGCAGCAGTCGTCGA
AAGCCGTTCCCCATACGAAAGGCTTCAGACTCAAGTGGCGCATGCTACTG
CTTCCCTCTGCTGATGTCACGGCTGGCACTACGA
UFO05050.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7442-RA | 2085 | CG7442-RA | 260..1371 | 9..1113 | 5160 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21937302..21937814 | 565..1075 | 2140 | 97.5 | Plus |
| 3L | 28110227 | 3L | 21935263..21935504 | 220..461 | 1210 | 100 | Plus |
| 3L | 28110227 | 3L | 21934963..21935177 | 9..223 | 1075 | 100 | Plus |
| 3L | 28110227 | 3L | 21937139..21937242 | 462..565 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:37:40 has no hits.
UFO05050.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:16:28 Download gff for
UFO05050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7442-RA | 252..1373 | 6..1118 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:13 Download gff for
UFO05050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7442-RA | 257..1378 | 6..1118 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:20 Download gff for
UFO05050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7442-RA | 257..1378 | 6..1118 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:20 Download gff for
UFO05050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21934960..21935177 | 6..223 | 99 | -> | Plus |
| 3L | 21935267..21935504 | 224..461 | 100 | -> | Plus |
| 3L | 21937139..21937242 | 462..565 | 100 | -> | Plus |
| 3L | 21937303..21937864 | 566..1118 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:13 Download gff for
UFO05050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21928060..21928277 | 6..223 | 99 | -> | Plus |
| arm_3L | 21928367..21928604 | 224..461 | 100 | -> | Plus |
| arm_3L | 21930239..21930342 | 462..565 | 100 | -> | Plus |
| arm_3L | 21930403..21930964 | 566..1118 | 96 | | Plus |
