UFO05051.5prime Sequence
1179 bp (1040 high quality bases) assembled on 2009-06-30
> UFO05051.5prime
CAGTCGACATGGTCGACAACAATAACCTACGCAGTGCGGTGATCAGCGAT
GCCCCGCTACTGCCGCCCTCGAGCAGCATCGGAGTGGGCGTTTCAAGCGG
CGGAGGATATCCGCCGGAAGCGGTGCTGCGTACTCCGTATGGCAATGTTA
GGGCTCTGCCCGGACCGGCGCAGCCCCCTCCTCTGCCGCAATCCCCATTC
CAGCAGACACAACAGTACGGTGGTTTCGGCAGCGGGTACGGCGGAAACAA
CTACGGACTCGGGGGTTATGGTGGTTTCAACAGTGGCGCCTTTGGATATG
GTGGACTGGGTGGATTTGGAAGTGGACTTGGAAGTGGATTTGGAAGTGGA
TACGGGTATGGAGGTGGCTATGGCGGAGGCTATGGTGGAGGCTTCGGCGG
TGGGTACAACAGATTTGGAGCAATGGGTGAAAACGATGCGGAGCAGCGGT
TCATTTATATGGCAGAGTCCAGCTCGCGCCCGGCCTTTCAGAGCATCGAA
TCTCTGGTGTCGGCCATCGGCAACATCGCCTCTATGCTGGACTCCACATT
CTTCGCGCTGACCAGCTCGTTTCGGGCCATTCTCGGCGTGGCCACGAACT
TTGTACGGCTGCGAAGTGTGTTTGCCCAGTTTTGGACCACGTTTGCCATA
TTCCGCGGTCTAAACTGGATGTACAGAAAGATTCTCTATTGGCTGCGCCT
ATCGAACCTGGACCCTTCATCGGCAGCCTTTAAGAAGGCCTTTGCCGAGG
CACTGAACGAAAACAACGGCCAGGCGAGAGGAGCACCTAATGTGCCGCGA
AAGGGCAACTCACCCTGGCCGGTGCTGGCCTTTATCAGCTTCATCTTTAC
TGCTCCCTACTTGATCATGAAGCTGCTGGGAACCGTGACGAACACCGCCC
AGGAGAAGCCCGTAATCCGGCCAAGTGGACTGCGCCGATTAGACTCAGCC
GTTTACGAATTCGTGGCTCGCAGCCGAGCGAGCTTTCCCTTGCGCGCGGC
CAAATGCTACATGTGCTCCCGCGACATCCAGCAAACGCTCATCTGCTGAA
CACGGCTGGCTCTAACCACCACCACGGAAGACTCGCATCATTCAATTAGA
TTATGTGAAATCGCCCAACCAATGCCTAGATGCAGGATCACAGCCGCTCA
GCAACGACTATGAATTGCCGGGGACCTGG
UFO05051.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex13-RA | 1768 | CG4663-RA | 276..1408 | 8..1125 | 5150 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13229287..13229959 | 680..8 | 3365 | 100 | Minus |
| 2R | 25286936 | 2R | 13229007..13229232 | 905..680 | 1130 | 100 | Minus |
| 2R | 25286936 | 2R | 13228716..13228868 | 1053..907 | 350 | 89.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:02:27 has no hits.
UFO05051.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:16:29 Download gff for
UFO05051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4663-RA | 263..1425 | 1..1145 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:07 Download gff for
UFO05051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex13-RA | 269..1431 | 1..1145 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:29 Download gff for
UFO05051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex13-RA | 269..1431 | 1..1145 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:29 Download gff for
UFO05051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13229003..13229232 | 680..908 | 99 | <- | Minus |
| 2R | 13229288..13229962 | 1..679 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:07 Download gff for
UFO05051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9116508..9116737 | 680..908 | 99 | <- | Minus |
| arm_2R | 9116793..9117467 | 1..679 | 99 | | Minus |
