UFO05055.5prime Sequence
1117 bp (1026 high quality bases) assembled on 2009-06-30
> UFO05055.5prime
CAGTCGACATGTTCATCTGGGACTGGTTCACCGGAGTGCTGGGATACCTG
GGTCTGTGGAAAAAGTCTGGCAAATTATTGTTCCTGGGCCTGGATAATGC
TGGCAAAACCACACTCTTGCATATGCTCAAAGATGATAAGCTGGCGCAGC
ATGTGCCCACACTGCATCCAACATCCGAGGAGCTGTCCATCGGCAACATG
CGCTTCACTACATTCGACTTGGGTGGCCACACTCAGGCACGACGCGTCTG
GAAGGACTACTTCCCTGCTGTGGACGCCATCGTTTTCTTAATAGACGCCT
GGGACCGTGGCCGCTTCCAGGAGAGCAAAAACGAGCTGGATTCGCTGCTC
ACGGATGAGGCGCTGTCCAACTGCCCCGTGCTCATATTGGGCAACAAAAT
CGATAAGCCCGGCGCGGCTAGCGAGGATGAGCTGAGAAACGTGTTCGGAC
TGTATCAGCTAACAACCGGCAAGGGCAAAGTTGCACGCGCCGATTTGCCC
GGCCGTCCTCTGGAATTGTTCATGTGCTCCGTGCTGAAGCGACAGGGCTA
CGGCGAGGGTTTCCGTTGGCTGGCGCAGTATATCGATGCAAGCTTTCTAG
ACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCAT
AATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGT
GCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGA
ACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGT
CCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGT
ACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACG
GCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGGCTTGCGT
ATAATATTTGCCCATGGTGAAACGGGGGCGAAAAGTGTCCATAATGGCCA
CGTTTAATCAAACTGGTGAACTCACCCAGGATGCTGAAACGAAAACATAT
CTCAATAATTTTAGATAGCAGCTTCACCGTACCGCCCATCTGCATATTGG
TAGAACTGCGAATCTCT
UFO05055.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sar1-RE | 1452 | CG7073-RE | 113..691 | 9..587 | 2895 | 100 | Plus |
| Sar1-RC | 1801 | CG7073-RC | 462..1040 | 9..587 | 2895 | 100 | Plus |
| Sar1-RD | 1552 | CG7073-RD | 213..791 | 9..587 | 2895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22359524..22359761 | 237..474 | 1190 | 100 | Plus |
| 3R | 32079331 | 3R | 22358371..22358491 | 51..171 | 605 | 100 | Plus |
| 3R | 32079331 | 3R | 22359835..22359950 | 472..587 | 580 | 100 | Plus |
| 3R | 32079331 | 3R | 22358563..22358628 | 172..237 | 330 | 100 | Plus |
| 3R | 32079331 | 3R | 22357629..22357673 | 9..53 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:52:09 has no hits.
UFO05055.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:16:31 Download gff for
UFO05055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sar1-RE | 216..805 | 1..592 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:16:46 Download gff for
UFO05055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sar1-RA | 157..746 | 1..592 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:19 Download gff for
UFO05055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sar1-RD | 206..795 | 1..592 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:19 Download gff for
UFO05055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22357622..22357671 | 1..51 | 92 | -> | Plus |
| 3R | 22358372..22358491 | 52..171 | 100 | -> | Plus |
| 3R | 22358563..22358628 | 172..237 | 100 | -> | Plus |
| 3R | 22359525..22359760 | 238..473 | 100 | -> | Plus |
| 3R | 22359837..22359954 | 474..592 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:16:46 Download gff for
UFO05055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18183344..18183393 | 1..51 | 92 | -> | Plus |
| arm_3R | 18184094..18184213 | 52..171 | 100 | -> | Plus |
| arm_3R | 18184285..18184350 | 172..237 | 100 | -> | Plus |
| arm_3R | 18185247..18185482 | 238..473 | 100 | -> | Plus |
| arm_3R | 18185559..18185676 | 474..592 | 98 | == | Plus |
