UFO05056.5prime Sequence
1127 bp (984 high quality bases) assembled on 2009-06-30
> UFO05056.5prime
CAGTCGACATGAACACTGGAATCTCCTTAAACGAGCGCTTTACGCAGATG
CAGTCAAAGCAGCCGCCACAGGGACGCGGTCGCAGCCGCTCCAGGAGCAG
GAGTCGCCGCATTGTGAGCAGCGGAGCCGGAAATCAAGGAATGTCCGCGG
TCAACTCTAGGCTGCTGAATGAATTCAAAAGGCTCCACACCGTTCAGACG
GCCCTCAAACTGAAGCGCAGAAGCTTACGGACCACCGCAGTCAGCGGTCG
TGGACCACGCGTCGCCGGCGTCAAGTCGCTGCGACTGGCGCCCAACGGGA
AGCCCATACGGTCCAACAACGTGACCAGGGTAGCAACGATGCGTGCCGAT
CTAGTGGCAAGCGGCAATGCCGCACGCAATCGCCGCAGCGGCAGCAGCAT
GCGCAATGTCCCCGCCACTAACGGTGGTGGAGGCGGACTTCGGCAGCGGC
TAGGACAGCGCCGCCCTTCTGTGGGCGGTGCCGCCGAGCGCGTTGAGCGT
CGTCAGCGACAGCAGCAGCAAGCCCCACGAGGACGTTCCCGCTCTCAGTC
CCGTTCGCGCCACCCGCAAATACAGCGTGTGGACAGAGCACGTTCCCAAA
GCCGTGGACGCAGCATTGGGCGTTCCCAGAGCCGCAATCGCGATCGCTCC
GCCCAGGGCCGAGTTCCAGTGAAACAGCGGCTTTCAGTCAAGCACCGCCT
TGGCGTGCGAACCGGCCAGAGAAACAACCAGGCCAAGATCCCACCGCAGC
GCCGGGCACCAAGCCAAATTCGAGGTGTGGCAGGCGGACGGGTCGAGAAG
CGTCGTAGTGCTCAGATTTCCCAAAGAAGGGAGTTTCCGCCTCGATTGCC
GGGACGTCAAGGACGACCACGTAGAAGATCTGTTGCAAGAAACGCTGCTT
CTAGCATTGGGCAGTTACAATTCTGCTTCTGCTCGTCGCTCACGCTCGCG
CAATCGTGCTGCCGCGTCGCTGCTGCCGCTATCGCGCTACTGTTCAGGGC
AGGCTAGTCCTCGCCAGAGAGCGGACGCATGCAGGCGCTGCCAGGCAAGA
TCATCAAAATGGTAAGCTGAAAACCCCACTAGTAAACGTCTCAAGGCGCA
ACTAAACCGGTCAAGTGGCGTCACCAA
UFO05056.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9775-RE | 1966 | CG9775-RE | 401..1474 | 8..1070 | 5000 | 98.4 | Plus |
| CG9775-RC | 1740 | CG9775-RC | 175..1248 | 8..1070 | 5000 | 98.4 | Plus |
| CG9775-RA | 1930 | CG9775-RA | 365..1438 | 8..1070 | 5000 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4639018..4639557 | 877..338 | 2605 | 99.6 | Minus |
| 3R | 32079331 | 3R | 4640013..4640223 | 218..8 | 1040 | 99.5 | Minus |
| 3R | 32079331 | 3R | 4639633..4639752 | 338..219 | 600 | 100 | Minus |
| 3R | 32079331 | 3R | 4638652..4638841 | 1056..876 | 490 | 93.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:02:38 has no hits.
UFO05056.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:16:33 Download gff for
UFO05056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9775-RC | 127..1210 | 1..1073 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:14 Download gff for
UFO05056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9775-RA | 358..1441 | 1..1073 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:33 Download gff for
UFO05056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9775-RA | 358..1441 | 1..1073 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:33 Download gff for
UFO05056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4638632..4638839 | 878..1073 | 92 | <- | Minus |
| 3R | 4639018..4639557 | 338..877 | 99 | <- | Minus |
| 3R | 4639634..4639752 | 219..337 | 100 | <- | Minus |
| 3R | 4640013..4640227 | 1..218 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:14 Download gff for
UFO05056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 464354..464561 | 878..1073 | 92 | <- | Minus |
| arm_3R | 464740..465279 | 338..877 | 99 | <- | Minus |
| arm_3R | 465356..465474 | 219..337 | 100 | <- | Minus |
| arm_3R | 465735..465949 | 1..218 | 97 | | Minus |
