UFO05057.5prime Sequence
1111 bp (982 high quality bases) assembled on 2009-06-30
> UFO05057.5prime
CAGTCGACATGGTGAACAACACTGTTGATACTGAAGCCACAGAGATTCGC
TGCCAGGAGAAGTCCCGCGGGGGATTGAGCTATGAGGTCATCCTGGCCGA
ACCGGCACCCAATGTGGCCGTTCCAAAACGACCGGTCACCCCTGGCAAGA
ACGTTAGCGTCGAGGAGATTGAGCAGAAACTTAAGGCGGCCGAGGAACGT
CGCATTTCTCTAGAAGCCAAGAAGATGGCTGACATCTCCACTAAGCTGGC
TAAAGTCGAGGAGGCGACTCGCAAAAAGGATGAGATCACCAATGAGTTTA
TTACTCAGACCAAGGAGCAGCTGGAGTCGAAAATGGAGCTGCATGTGGAG
AAGCGAGAGGCCATCATCAGTGACATGAAGGAGAAGCTAAAGATCCATGC
CCAGGATATCGAAAAGACGCGTGAGACTCTTGAGCAGCAGAAGGCCAACG
AGCAGAAGGCAATCGAGGAAAAGTTGAAGATTGCTCAGTCTCTTCGCGAT
GAGAATATCAAGAAAATGTTGGATCGCCTAAAGGAGCATAACACAATCAA
AATTGCCGAAATCAAATCGCAGAACGATCAATTGGAATGTCAAAAGATCG
AGGAGAAAGCGCGCATTTATGAGAACAAATTGTTCGCCGCCGAGCAGAAA
CGCGAAAAGGAATTGCAAAAAAAAATTGAAAAAGTTCAAAAACTCGAACG
TCGCGCTGAGCTCGTGCGCCAGAACAAGGCCCAGGCCCAGGATTTGGATG
GTCAGCAGAGCGCCATTGCCTCCTCAGGCGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAA
TCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGGTTGGAT
TCTCACCAATAAAAAACGCCCGGCGGCCAACCGAGCGTTCTGAACAAATC
AGATGGAGTTCTGAGGTCATTACTGGATCTATCACAGGAGTCCAGGCGAG
CTCGATTATCAAATTACGTCGCTGCACTCATCGCAGTACTGTTTGTAATT
CATTAGCATCTGCGAAATGCAAGCAATCACAAACGGCATGATGACTGATC
GCAGCGGCATC
UFO05057.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stai-RC | 1859 | CG31641-RC | 251..1021 | 9..779 | 3855 | 100 | Plus |
stai-RD | 2872 | CG31641-RD | 537..1280 | 36..779 | 3720 | 100 | Plus |
stai-RE | 2395 | CG31641-RE | 815..1557 | 37..779 | 3715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6122005..6122190 | 207..392 | 930 | 100 | Plus |
2L | 23513712 | 2L | 6121772..6121943 | 35..206 | 860 | 100 | Plus |
2L | 23513712 | 2L | 6122698..6122859 | 540..701 | 795 | 99.4 | Plus |
2L | 23513712 | 2L | 6122260..6122410 | 389..539 | 755 | 100 | Plus |
2L | 23513712 | 2L | 6122978..6123061 | 696..779 | 420 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:57:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tirant | 8526 | Tirant TIRANT 8526bp | 7724..7808 | 360..444 | 110 | 58.8 | Plus |
UFO05057.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:16:34 Download gff for
UFO05057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RC | 250..1024 | 9..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:29 Download gff for
UFO05057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RC | 251..1025 | 9..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:37 Download gff for
UFO05057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RC | 251..1025 | 9..784 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:37 Download gff for
UFO05057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6101771..6101792 | 9..30 | 100 | <- | Plus |
2L | 6121772..6121943 | 31..206 | 97 | -> | Plus |
2L | 6122005..6122190 | 207..392 | 100 | -> | Plus |
2L | 6122264..6122410 | 393..539 | 100 | -> | Plus |
2L | 6122698..6122853 | 540..695 | 100 | -> | Plus |
2L | 6122978..6123065 | 696..784 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:29 Download gff for
UFO05057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6101771..6101792 | 9..30 | 100 | <- | Plus |
arm_2L | 6121772..6121943 | 31..206 | 97 | -> | Plus |
arm_2L | 6122005..6122190 | 207..392 | 100 | -> | Plus |
arm_2L | 6122264..6122410 | 393..539 | 100 | -> | Plus |
arm_2L | 6122698..6122853 | 540..695 | 100 | -> | Plus |
arm_2L | 6122978..6123065 | 696..784 | 97 | == | Plus |