UFO05061.5prime Sequence
1098 bp (1000 high quality bases) assembled on 2009-06-30
> UFO05061.5prime
CAGTCGACATGCTGTCGCAATCCCTGCTGAGTGGCATGCGTGTCCTGCGC
ACAGAGGCCCGTCGTAACTTCGGAATCGTTGCCCCTGCCCTGAACAAGGC
CTCCGATCCCATCCAGCAGCTGTTCCTGGACAAAGTGCGCGAGTACAAGC
AGAAGAGCGCCGGTGGCAAGCTGGTGGACTCCAATCCCGATATTGAGCGG
GAGCTGAAGACCGAACTGGACCGTGTGGCCAAGCAGTTTGGCAGCGATGG
CAAGACCGACATGCTGAAGTTCCCCGAATTCCAGTTCCCCGATGTTAAGG
TCGATCCCATCACCCAGGCCCCACAGGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCA
TAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCT
CACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGA
TGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCT
CGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAAT
TCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAAC
CTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGC
CCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGGCCACGTTTAA
ATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATAT
TCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCC
ACATCTTGCGAATATATGTGTAGAAACTGCCGGAATCGTCGTGTATTCAC
TCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTACAAG
GGTGACACTATCCCATATCACCAGCTCACGTCTTTCATGCCATACGAAAT
TCCGGATGAGCATTCATCAGCGGCAGATGGTGAATAAAGGCGGAAAAACC
TTGTGCTATTTTTCTTTACGGTCTTAAAAGCGTATTCAGCTGACGACT
UFO05061.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ATPsyn-Cf6-RB | 616 | CG4412-RB | 150..467 | 9..326 | 1590 | 100 | Plus |
| ATPsyn-Cf6-RC | 586 | CG4412-RC | 85..402 | 9..326 | 1590 | 100 | Plus |
| ATPsyn-Cf6-RA | 526 | CG4412-RA | 85..402 | 9..326 | 1590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23355404..23355569 | 326..161 | 830 | 100 | Minus |
| 3R | 32079331 | 3R | 23355634..23355785 | 160..9 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:38:34 has no hits.
UFO05061.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:16:39 Download gff for
UFO05061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATPsyn-Cf6-RA | 81..398 | 9..326 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:53 Download gff for
UFO05061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATPsyn-Cf6-RA | 85..402 | 9..326 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:48 Download gff for
UFO05061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATPsyn-Cf6-RA | 85..402 | 9..326 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:48 Download gff for
UFO05061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23355404..23355569 | 161..326 | 100 | <- | Minus |
| 3R | 23355634..23355792 | 1..160 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:53 Download gff for
UFO05061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19181126..19181291 | 161..326 | 100 | <- | Minus |
| arm_3R | 19181356..19181514 | 1..160 | 97 | | Minus |
