UFO05065.5prime Sequence
1121 bp (967 high quality bases) assembled on 2009-06-30
> UFO05065.5prime
CAGTCGACATGACCACGAACAGCAGCTTCTTCGATGAACACATCGCCATG
ATATACTCCAACCTGATGGACCAGTACATGCCCGAGTACTTCAAAAGCTT
TGAGTACACGCCATGGGTTTTCTCCCTGCTGGGATCGGTGGTAATTGGAC
TGAGTGGCATATTCCCGCTGATCATCATTCCCACGGAGGAGAAAATGGCT
AAGGAGGGATACAAAGATCCTGCAGATTCAAAACTCCTGCGAGTGCTTCT
GAGTTTCGCGGTCGGCGGTCTGCTGGGCGATGTGTTCCTTCACCTGTTGC
CAGAAGCCTGGGAGGGCGATAATCAAGATCCTTCTAGTCACCCATCCCTG
CGCTCGGGCCTTTGGGTACTTTCCGGCATACTGATCTTCACGATCGTGGA
GAAAATCTTTTCCGGATATGCCAGCGCGGACGAGGAGAACCCTCAGCCCA
AGTGCGTGGAGATAGCCAACTGCCTGTTGCGTCGACATGGCGGCCAACTA
CCAGAGGGCGAAACCTCTGAGAGTTGTGGCGGCGCCTGCGACATCGAAGA
TGTAGGTAAAGTCTGTTTCCTACGCGAGCAGGAACAGAAGTCAAAGGAAA
GGAAGGAACAGCCGAAGAAGGTGGCTGGTTATCTGAACCTCTTGGCCAAC
TCAATTGACAATTTCACACACGGTCTAGCCGTGGCTGGATCCTTTTTGGT
GTCCTTCAGACACGGCATTCTAGCCACTTTTGCCATATTGCTTCATGAAA
TTCCGCACGAGGTGGGGGATTTCGCAATCCTGCTTCGATCCGGATTCAGT
CGCTGGGACGCCGCGCGTGCGCAACTACTCACGGCGGGAGCTGGCCTGCT
CGGTGCTCTGGTGGCCATCGGAGCTCCGGCGTACGTCGGCATGGAGGCAC
GTACTTCGTTGATTATGCCGTCACCGCCGGCGGCTTTCTGCACATTGCTC
TGGTCACAGTATTACTGATTTCTTGAGGAGGAGGAGCGCAGGAGTCCATT
AGCAGCTGCTAGCACTGGATTTGGCATGGCGTTATGGCGTGGTGACATTC
TATTCGAACCGCAGCTTTCTAGACATTCGTTGCGCCGGCCGGTATGCCTA
TCTAATCAATACAATCTATTC
UFO05065.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip99C-RJ | 1638 | CG7816-RJ | 314..1376 | 9..1059 | 4940 | 98.4 | Plus |
| Zip99C-RI | 1709 | CG7816-RI | 385..1447 | 9..1059 | 4940 | 98.4 | Plus |
| Zip99C-RH | 1476 | CG7816-RH | 152..1214 | 9..1059 | 4940 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29864413..29864829 | 741..325 | 2085 | 100 | Minus |
| 3R | 32079331 | 3R | 29865057..29865267 | 219..9 | 1055 | 100 | Minus |
| 3R | 32079331 | 3R | 29864208..29864350 | 883..742 | 665 | 99.3 | Minus |
| 3R | 32079331 | 3R | 29864889..29864996 | 327..220 | 540 | 100 | Minus |
| 3R | 32079331 | 3R | 29863991..29864137 | 1034..894 | 390 | 93.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:02:49 has no hits.
UFO05065.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:16:43 Download gff for
UFO05065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7816-RD | 159..1230 | 1..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:19 Download gff for
UFO05065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7816-RH | 143..1214 | 1..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:38 Download gff for
UFO05065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zip99C-RH | 143..1214 | 1..1059 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:38 Download gff for
UFO05065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29863963..29864136 | 895..1059 | 91 | <- | Minus |
| 3R | 29864195..29864350 | 742..894 | 98 | <- | Minus |
| 3R | 29864413..29864826 | 328..741 | 100 | <- | Minus |
| 3R | 29864889..29864996 | 220..327 | 100 | <- | Minus |
| 3R | 29865057..29865276 | 1..219 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:19 Download gff for
UFO05065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25689685..25689858 | 895..1059 | 91 | <- | Minus |
| arm_3R | 25689917..25690072 | 742..894 | 98 | <- | Minus |
| arm_3R | 25690135..25690548 | 328..741 | 100 | <- | Minus |
| arm_3R | 25690611..25690718 | 220..327 | 100 | <- | Minus |
| arm_3R | 25690779..25690998 | 1..219 | 98 | | Minus |
