UFO05066.5prime Sequence
1161 bp (998 high quality bases) assembled on 2009-06-30
> UFO05066.5prime
CAGTCGACATGTCCGAAAAGAAGCGATTTGTGTGCGTTAATTGTGGACAC
AGAGTAAAAGAACTGTTCAAGAAATACAGCAATACTATGAAAACCACGCA
ATGCGACAACTGTCACCAAATCACGGATAAATACATTGAGTTCGAGGAGT
TTATCATATTAATAGATGCACTGCTATTAGATTCGTGCGCCTTCCGGCAC
ATTATATACAATGGCGACTTTAAGGTGACGAGCTCTACTGGAAGGTTTCG
CTGGTGGTGCTGCTCCTGGAATCCTTTGCGCTGTGCCGCCAAAAACTGCC
CGACCCTCCGAATGCCTCTTTGCATGTCCACGAAAAGGGCTTTTACACAT
ATACCCTTCAAAACATGGGAGATTACATGTTCAGCAAGCTTTCTAGACCA
TTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATC
ATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTT
GGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAA
ATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAA
GCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTG
TTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCAT
GATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAA
TATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCAC
GTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAA
ACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAA
CACGCCACATCTTGCGAATATATGTTGTAGAAACTGCCGGAAATCGTCGT
GGTATTCCTTCCAGAGCGATGAAAAACGTTTCAGTTGCTCATGGAAACGG
TGTAACAAGGGTGACACTATCCCATATCACCAGCTCACCGTCTTTCATTG
CATACGAAATTCCGGATGAGCATTCATCAGCGGCAGATGTGATAAGCGAT
AAACTTGGCTATTTTCTTACGCTTAAGCGTAATATCACTGACGGCTGGTA
AGTACTGGACA
UFO05066.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32442-RB | 942 | CG32442-RB | 93..467 | 9..383 | 1875 | 100 | Plus |
| CG32442-RA | 934 | CG32442-RA | 93..459 | 9..383 | 1745 | 97.9 | Plus |
| CG32442-RC | 930 | CG32442-RC | 93..455 | 9..383 | 1685 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21528770..21528910 | 371..231 | 705 | 100 | Minus |
| 3L | 28110227 | 3L | 21528958..21529085 | 232..105 | 640 | 100 | Minus |
| 3L | 28110227 | 3L | 21529145..21529241 | 105..9 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:52:16 has no hits.
UFO05066.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:16:44 Download gff for
UFO05066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32442-RB | 66..445 | 9..390 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:16:51 Download gff for
UFO05066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32442-RB | 93..472 | 9..390 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:23 Download gff for
UFO05066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32442-RB | 93..472 | 9..390 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:23 Download gff for
UFO05066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21528770..21528908 | 233..371 | 100 | <- | Minus |
| 3L | 21528958..21529085 | 105..232 | 100 | <- | Minus |
| 3L | 21529146..21529241 | 9..104 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:16:51 Download gff for
UFO05066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21521870..21522008 | 233..371 | 100 | <- | Minus |
| arm_3L | 21522058..21522185 | 105..232 | 100 | <- | Minus |
| arm_3L | 21522246..21522341 | 9..104 | 100 | | Minus |
