UFO05067.5prime Sequence
1117 bp (1014 high quality bases) assembled on 2009-06-30
> UFO05067.5prime
CAGTCGACATGGATGATGCGGACTACGACAACGACGACGTTGGCGGCGAT
GACTTCGACGACGTCGACGAGGACGTGGACGAGGACATTAACCAGGAGGA
GGAGGCGGACAACATCGAGATCATAGCTCCCGGTGGTGCGGGCGGAGGCG
GTGTGCCCAAGTCCAAGCGCATTACCACAAAGTACATGACGAAATACGAG
CGCGCCAGAGTTCTGGGCACACGAGCGCTTCAGATCGCCATGTGCGCACC
CATCATGGTGGAGCTGGACGGGGAAACGGACCCCCTGCAGATCGCCATGA
AAGAGCTGAAACAAAAGAAAATTCCCATCATCATCCGCCGATACCTGCCG
GATCACTCCTACGAGGACTGGAGCATCGACGAGCTCATCATGGTGGACAA
CGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTC
ATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCC
TGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCA
ACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGAT
CTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTG
CCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGA
AGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACC
TTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAA
GTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGG
GATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAG
GCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAA
CTGCCGGAAATCGTCGTTGTATTCACTCCAGAGCGATGAAAACGTTTCAG
TTGCTCATGGAAACGGTGTAACAGTGAACCTATCCCATATCACCAGCTCA
CGTCTCATGCATACGAATCGATGACATTCATCAGCGGCCGATTGATAGCG
ATAACATTGCTATTTCT
UFO05067.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpII18-RA | 541 | CG1163-RA | 93..485 | 9..401 | 1965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5371978..5372341 | 38..401 | 1820 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:08:56 has no hits.
UFO05067.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:16:45 Download gff for
UFO05067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII18-RA | 85..487 | 1..408 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:01 Download gff for
UFO05067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII18-RA | 88..490 | 1..408 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:09 Download gff for
UFO05067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII18-RA | 88..490 | 1..408 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:09 Download gff for
UFO05067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5371882..5371915 | 1..37 | 91 | -> | Plus |
| 3R | 5371978..5372341 | 38..401 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:01 Download gff for
UFO05067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1197700..1198063 | 38..401 | 100 | == | Plus |
| arm_3R | 1197604..1197637 | 1..37 | 91 | -> | Plus |
