UFO05068.5prime Sequence
1119 bp (1003 high quality bases) assembled on 2009-06-30
> UFO05068.5prime
CAGTCGACATGAATTTCGCGGGCAAAGTGGTCCTTATTACGGGAGCAAGC
TCCGGAATCGGAGCTGCAACCGCCATTAAGTTTGCCAAGTACGGCGCCTG
TCTGGCTCTCAATGGACGCAATGTGGAGAACCTGAAGAAGGTAGCCGCTG
AGTGCAGCAAGGTGAGCCAATCACAGCCGGCCCTGGTGGTGGGCGACATT
GCCAAGGAGGCGGACACCCAGAGGATTTGGTCGGAAACCCTGCAGCAGTA
CGGCAAATTGGATGTGCTGGTCAACAATGCCGGAATCATCGAGACGGGCA
CCATCGAGACGACTAGCCTGGAGCAGTACGACCGCGTCATGAACACCAAC
CTGAGGGCAATCTACCACCTTACTATGCTGGCCACCCCCGAGCTGGTCAA
GACCAAGGGCAACATCGTGAACGTGTCCAGTGTCAATGGGATTCGCTCCT
TCCCTGGCGTTCTGGCCTACAACATATCCAAAATGGGAGTGGATCAGTTC
ACCCGCTGTGTGGCGTTGGAGCTGGCTGCCAAGGGTGTGCGCGTGAACTG
CGTGAATCCCGGCGTGACGGTCACCAATCTGCATGCCCGCGGCGGCATGG
ATGCGGAGACGTACAAAAAGTTCCTGGAACACTCCAAGACCACCCATGCC
TTGGGTCGTCCTGGAGATGTCAAGGAGGTGGCTGCGGCCATTGCCTTCCT
GGCCAGCGATGAGGCCAGCTTCAGCACTGGAGTCAGCCTGCCGGTGGACG
GCGGTCGCCATGCCATGTGCCCACGCGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCA
TAATCACAACTAGCCTAGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTTTGAACAAATCCAGAT
GGAGTTCTGAGGTCATTACTGGATCTATTCAACAGGAGTCCAAGCGAGCC
TCGATTATCAAATTACGGCCCCGCCCTGCCACTCATCGGCAGTACTTGTG
TTTATTCAATTAAGCATTCTGCGACATGCAGCCATCACAAACGGCATGTA
TGACTGATCGCACGGCATC
UFO05068.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31548-RA | 952 | CG31548-RA | 47..815 | 8..776 | 3845 | 100 | Plus |
| CG12171-RA | 1014 | CG12171-RA | 324..832 | 264..772 | 985 | 79.8 | Plus |
| CG31549-RB | 991 | CG31549-RB | 321..832 | 261..772 | 880 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5636038..5636806 | 776..8 | 3845 | 100 | Minus |
| 3R | 32079331 | 3R | 5633950..5634458 | 264..772 | 985 | 79.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:37:47 has no hits.
UFO05068.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:16:47 Download gff for
UFO05068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31548-RA | 32..811 | 1..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:18 Download gff for
UFO05068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31548-RA | 39..818 | 1..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:23 Download gff for
UFO05068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31548-RA | 39..818 | 1..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:23 Download gff for
UFO05068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5636035..5636811 | 1..780 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:18 Download gff for
UFO05068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1461757..1462533 | 1..780 | 99 | | Minus |
