UFO05071.5prime Sequence
1114 bp (966 high quality bases) assembled on 2009-06-30
> UFO05071.5prime
CAGTCGACATGCATTTCACCGCTAGTCTTCTATTCATTGGACTGGCTTGT
GCCTTCTCGAGTGCCTGGGCTTATCCCTATCCTGATCCCCGAGAGATTGT
GAATCTGCAGCCTGAACCACTGGCATATGCTCCCAATTTTGATGTGCCCC
TGCACAGAGTGCGTCGCCAGTTCCAATTGAATGGCGGTGGCGGTGGAAGC
CCAAAGCAAGGATTCGATCTGAGCCTCAACGGACGTGCTCCCGTTTGGCA
GAGCCCCAATGGACGCCACTCCTTCGATGCCACGGGATCGTATGCCCAGC
ACCTTGGTGGACCCTATGGCAACAGCCGGCCTCAGTGGGGAGCCGGTGGA
GTGTATACCTTCAGGTTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACA
ACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATA
AAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTC
TGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCA
AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG
CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCG
CCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTG
AAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACT
GGTGAAACTCACCCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATA
AACCCTTTAGGGAAATAGGCCAGGGTTTTCACCGTAACACCGCCACATCT
TGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGTATTCACTCCAG
AGCGATGAAAACGTTTCAGTTGCTCATGGAAAACGTGTAACAGGGTGAAC
ACTATCCCATATCACCAGCTCACGTCTTTCAATGCATACGAATCGATGAC
CATCATCAGGCGGCAGAATGTATAAGGCGGATAACTTGCTAGTTCTACGC
TTAAAGCGTAATCA
UFO05071.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DptB-RA | 449 | CG10794-RA | 32..391 | 9..368 | 1800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18867595..18867837 | 126..368 | 1215 | 100 | Plus |
| 2R | 25286936 | 2R | 18867422..18867538 | 9..125 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:35:19 has no hits.
UFO05071.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:16:35 Download gff for
UFO05071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DptB-RA | 24..392 | 1..368 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:42 Download gff for
UFO05071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DptB-RA | 23..391 | 1..368 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:04 Download gff for
UFO05071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DptB-RA | 23..391 | 1..368 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:04 Download gff for
UFO05071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18867595..18867837 | 126..368 | 100 | == | Plus |
| 2R | 18867413..18867538 | 1..125 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:42 Download gff for
UFO05071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14754918..14755043 | 1..125 | 96 | -> | Plus |
| arm_2R | 14755100..14755342 | 126..368 | 100 | == | Plus |
