UFO05075.5prime Sequence
1162 bp (1021 high quality bases) assembled on 2009-06-30
> UFO05075.5prime
CAGTCGACATGTGCAGTCTGCCCCATCATTCATCTTTCGGCGTCGGTCTG
GTGACGCGCAAGATGGGCAACAGCCTGAGCCCCACAGTGGAGGTGACCTT
GGAGGGCGATACCTACACCCTGACTACCACCTCCACCTTCAAGACCTCTG
CCATCAGCTTCAAGCTGGGCGTTGAGTTCGACGAGGAGACCCTGGACGGT
CGCAACGTCAAGAGCATCATCACCCTGGATGGCAACAAGCTGACGCAGGA
GCAGAAGGGCGACAAGCCCACCACCATCGTCCGCGAGTTCACCGACAACG
AGCTGATCACCACCCTCACCATCGGCAACGTTAAGTGCGTGCGCGTCTAC
AAGGCCGTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC
GACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCA
TCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGG
GCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACT
CACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAG
GGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATG
TGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAA
CGTTTCAGTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCA
TATCACCAGCTCACCGTCTTTCATTGCCATACGAAATTCCGGATGAACAT
CATCAGGCGGGCAGATGGTGAATAAGGGCGGATAACTTGGTGCTTATTTT
TCTTTACGGTCTAAAGCGTAATATCCAGCTGACGTCTGTTAGGTACTTGA
CACTGACTGATG
UFO05075.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fabp-RA | 1051 | CG6783-RA | 435..785 | 9..359 | 1755 | 100 | Plus |
| fabp-RB | 723 | CG6783-RB | 137..457 | 39..359 | 1605 | 100 | Plus |
| fabp-RC | 1660 | CG6783-RC | 137..409 | 39..311 | 1365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11564440..11564712 | 311..39 | 1365 | 100 | Minus |
| 3R | 32079331 | 3R | 11564324..11564371 | 359..312 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:12:42 has no hits.
UFO05075.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:16:50 Download gff for
UFO05075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6783-RA | 424..784 | 4..364 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:59:14 Download gff for
UFO05075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fabp-RA | 424..784 | 4..364 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:21 Download gff for
UFO05075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fabp-RA | 429..789 | 4..364 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:21 Download gff for
UFO05075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11564324..11564371 | 312..359 | 100 | <- | Minus |
| 3R | 11564440..11564711 | 40..311 | 100 | <- | Minus |
| 3R | 11564784..11564820 | 4..39 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:59:14 Download gff for
UFO05075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7390046..7390093 | 312..359 | 100 | <- | Minus |
| arm_3R | 7390162..7390433 | 40..311 | 100 | <- | Minus |
| arm_3R | 7390506..7390542 | 4..39 | 91 | | Minus |
