UFO05077.5prime Sequence
1130 bp (1012 high quality bases) assembled on 2009-06-30
> UFO05077.5prime
CAGTCGACATGTCTTTCGTTGGCAAGAAGTACAAGCTGGACAAGTCCGAG
AACTTCGATGAGTACATGAAGGAGCTGGGCGTCGGTCTGGTGACGCGCAA
GATGGGCAACAGCCTGAGCCCCACAGTGGAGGTGACCTTGGAGGGCGATA
CCTACACCCTGACTACCACCTCCACCTTCAAGACCTCTGCCATCAGCTTC
AAGCTGGGCGTTGAGTTCGACGAGGAGACCCTGGACGGTCGCAACGTCAA
GAGCATCATCACCCTGGATGGCAACAAGCTGACGCAGGAGCAGAAGGGCG
ACAAGCCCACCACCATCGTCCGCGAGTTCACCGACAACGAGCTGATCACC
ACCCTCACCATCGGCAACGTTAAGTGCGTGCGCGTCTACAAGGCCGTCGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACC
GAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTA
TCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCA
CTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGC
CATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTG
TCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTT
GTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGAT
TGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCC
AGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTTGTAGAAACT
GCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTCAGTTG
CTCATGGAAACGGTGTAAAAGGGTGAACACTATCCATATCACCAGCTCAC
CGTCTTTCATTGCATACGAAATCGATGACATCATCAGGCGGGCAGAATGT
GAATAAGCGATAGACTGTGCTTATTCTACG
UFO05077.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fabp-RB | 723 | CG6783-RB | 68..457 | 9..398 | 1950 | 100 | Plus |
| fabp-RC | 1660 | CG6783-RC | 68..409 | 9..350 | 1710 | 100 | Plus |
| sea-RD | 1660 | CG6782-RD | 68..409 | 9..350 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11564440..11564712 | 350..78 | 1365 | 100 | Minus |
| 3R | 32079331 | 3R | 11566917..11566987 | 79..9 | 355 | 100 | Minus |
| 3R | 32079331 | 3R | 11564324..11564371 | 398..351 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:56:36 has no hits.
UFO05077.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:16:51 Download gff for
UFO05077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6783-RB | 63..456 | 9..403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:10 Download gff for
UFO05077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fabp-RB | 63..456 | 9..403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:17 Download gff for
UFO05077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fabp-RB | 68..461 | 9..403 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:17 Download gff for
UFO05077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11564440..11564711 | 79..350 | 100 | <- | Minus |
| 3R | 11564324..11564371 | 351..398 | 100 | <- | Minus |
| 3R | 11566918..11566987 | 9..78 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:10 Download gff for
UFO05077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7390046..7390093 | 351..398 | 100 | <- | Minus |
| arm_3R | 7390162..7390433 | 79..350 | 100 | <- | Minus |
| arm_3R | 7392640..7392709 | 9..78 | 100 | | Minus |
