UFO05078.5prime Sequence
1114 bp (1003 high quality bases) assembled on 2009-06-30
> UFO05078.5prime
CAGTCGACATGGGCGACAACGTGGTGACGGAACTAAATAACTTGGATTTG
AACAATCAAAAGGCTGCCAAGATGAAGAAGGAGAAAAAGGAGAAGCCATC
CGGCGGTGGAGATACTCGCAAGGAACTCAGTCCCTTGCCCAAGTACATCG
AGGAGCGCAATGTCTTCTGGGAGAAGTGCAAGGCGGAATACGAGGCCGAA
CTGGCGGCCAAGAAGCGTGAGCCCATCAAGGTGACACTGCCCGATGGCAA
GCAGGTGGACGCCACCTCCTGGGAGACCACTCCGTACGAAGTGGCCCGCG
GCATTAGTCAGGGTCTCGCTGACAACACCGTCATCTCCAAGGTGAACGGC
GAGGTGTGGGATTTGGACCGTGTGCTCGAGGGAAACTGCACCCTGCAGCT
TCTCAAGTTCGACGACCCTGAGGCGCAGGCCGTCTTCTGGCACAGCTCTG
CCCACATCATGGGTGAGGCCATGGAGCGCATCTATGGTGGACACCTGTGC
TACGGTCCGCCCATTGAAAACGGCTTCTACTACGACATGCATCTGGAGGG
CGAGGGTATCTCCACCAACGACTACGGCGCCATGGAGGGTCTGGTTAAGC
AAATTGTCAAGGAGAAGCAGAACTTCGAACGTCTGGAGATGAAGAAGTCC
GACCTGCTGGAGATGTTCAAATACAATGAGTTCAAGGTGCGCATTCTCAA
CGAGAAGGTGACCACCGACCGCACCACTGTCTACAAGTGCGGTTCTTTGA
TCGATCTCTGCCGCGGACCTCATGTTCGTCACACCGGCAAGGTGAAGGCC
CTGAAGATCACCAAGAACTCCTCTACCTACTGGGGGGGGAAGGCTGACGC
TGAGACACTGCAACGCGTCTACGGCATCTCGTTCCCCGACCCGAAGCAGC
TCAAGGAGTGGGAGAAACTTCAGAGGAGGCGGCTAGCGTGATCACCGCAA
TCGGTCGCGAGCAGGAGCTGTTCTTCTTCCATGAACTTTCGCTGGCTCAT
GCTTTCAGCGCGAGGAGCGCACATCTACACACCTGATGGCTCATCAGCGG
ATATAAAGCGTGGATCAGAGTCATTCCCCACATCTCACAGCTAAGTTTGG
ATGACTCGCCTGCA
UFO05078.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aats-thr-RB | 2298 | CG5353-RB | 31..1154 | 9..1105 | 4940 | 97.2 | Plus |
Aats-thr-RD | 2796 | CG5353-RD | 306..1376 | 62..1105 | 4675 | 97 | Plus |
Aats-thr-RA | 2520 | CG5353-RA | 306..1376 | 62..1105 | 4675 | 97 | Plus |
Aats-thr-RD | 2796 | CG5353-RD | 31..86 | 9..64 | 280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12104687..12105121 | 123..557 | 2175 | 100 | Plus |
2L | 23513712 | 2L | 12105176..12105656 | 558..1029 | 2030 | 97.7 | Plus |
2L | 23513712 | 2L | 12104490..12104552 | 61..123 | 315 | 100 | Plus |
2L | 23513712 | 2L | 12103781..12103836 | 9..64 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:43:38 has no hits.
UFO05078.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:16:04 Download gff for
UFO05078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-thr-RB | 48..1098 | 9..1046 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:32 Download gff for
UFO05078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-thr-RB | 31..1081 | 9..1046 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:15 Download gff for
UFO05078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-thr-RB | 31..1081 | 9..1046 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:16:15 Download gff for
UFO05078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12103781..12103834 | 9..62 | 100 | -> | Plus |
2L | 12104492..12104552 | 63..123 | 100 | -> | Plus |
2L | 12104688..12105121 | 124..557 | 100 | -> | Plus |
2L | 12105176..12105677 | 558..1046 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:32 Download gff for
UFO05078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12103781..12103834 | 9..62 | 100 | -> | Plus |
arm_2L | 12104492..12104552 | 63..123 | 100 | -> | Plus |
arm_2L | 12104688..12105121 | 124..557 | 100 | -> | Plus |
arm_2L | 12105176..12105677 | 558..1046 | 97 | | Plus |