UFO05079.5prime Sequence
1118 bp (1012 high quality bases) assembled on 2009-06-30
> UFO05079.5prime
CAGTCGACATGACACAGGTGTTTATCAATGGTGCCAGAGACGATCTCAAT
GTACGGGAATTCCAGAGCCTGGATCCTTCGATTCAAGAGATCATCCTGGC
AGCCACGGAAGCCAGAAAACAGGCTTATTGTCCGTACAGTAACTTTGCCG
TAGGAGCCGCCCTGAGGACCAGCGATGGCACCATATACTCCGGTTGCAAC
ATCGAAAACGGGGCGTATGCCACCTGCATTTGTGCAGAGCGCACTGCAGC
CGTCAAGGCCATCAGTGAAGGCAAACGCGACTTTGTGGCTTGTGCAGTGG
TGGCCCAGCAGGATAATGGCTTCACCACGCCTTGTGGCGTCTGCCGGCAG
TTCCTCTCGGAGTTCGTCAACGGCAAGGACATCCCCCTGTACGCCGCCAA
GCCGACCAATCTTCCATTGAGGGTGCTCTGCACCAGCGTTCTCCAACTGC
TGCCCAACGGCTTTAGCTTCGCCAACGGAAAAGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAG
CGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGT
TGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATG
ATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAAT
ATTTGCCCATGGTGAAAACGGGGGCGAAGAGTTGTCCATATTGGGCCACG
TTTAAATCAAAACTGGTGAAACTCACCCCAGGGATTGGCTGAGACGAAAA
ACATATTCTCATAAACCCTTTAGGAAATAGGCCAGGGTTTCACCGTACAC
GCCACATCTGCGAATATATGTGTAGAACTGCCGGAAATCGTCTGGTATCA
CTCGAGCGATGAACGTTTCAGTTGCTCATGGCAACGGGTACAGGTGAACC
TATCCATATCCAGTCACG
UFO05079.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8360-RC | 787 | CG8360-RC | 175..649 | 8..482 | 2375 | 100 | Plus |
| CG8360-RA | 714 | CG8360-RA | 102..576 | 8..482 | 2375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8213778..8213997 | 263..482 | 1100 | 100 | Plus |
| 2L | 23513712 | 2L | 8213336..8213529 | 72..265 | 970 | 100 | Plus |
| 2L | 23513712 | 2L | 8213218..8213282 | 8..72 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:19:05 has no hits.
UFO05079.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:16:05 Download gff for
UFO05079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8360-RA | 34..514 | 1..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:03:56 Download gff for
UFO05079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8360-RA | 96..576 | 1..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:54 Download gff for
UFO05079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8360-RA | 96..576 | 1..482 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:54 Download gff for
UFO05079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8213781..8213997 | 266..482 | 100 | == | Plus |
| 2L | 8213212..8213282 | 1..72 | 94 | -> | Plus |
| 2L | 8213337..8213529 | 73..265 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:03:56 Download gff for
UFO05079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8213212..8213282 | 1..72 | 94 | -> | Plus |
| arm_2L | 8213337..8213529 | 73..265 | 100 | -> | Plus |
| arm_2L | 8213781..8213997 | 266..482 | 100 | == | Plus |
