UFO05080.5prime Sequence
1087 bp (967 high quality bases) assembled on 2009-06-30
> UFO05080.5prime
CAGTCGACATGGTTACCACTGTGAAGAATCGTCGCTTTGAGGATGAAGAC
TCCGGCTTGGGTGTCCGTCACTTCCAGGTCTTACTGCTATTCTTTGCCCT
TACGGTGGCCTATGGCTGCCGAGTCAACCTCTCCGTGGCTGTGGTGGCCA
TGACCGATGCCGCCTCCGTCAATCCCGATTTTCCCGAGTATAATTGGTCG
GAGAAGACGAAATCCCTGCTGCTGAGCAGCTTCTTCTGGGGCTATGTGAT
CACCCAGGTGCCAGCTGGTCAATTGGCTCGCAAATATGGCGGCAAAGTGA
TGATCCTGTCGGGACTGGCCATCTGCTCGATCCTGAACATCCTGACACCC
ATTTGCGCAAAGATCGGAGGCTGGCAGCTGGTCTGCGCCCTACGAGTGGT
GGAAGGTCTGTGCCAGGGCGTGGTCTTTCCCTCAACCCACACGATCCTCT
CCCAATGGGCACCGCCCAAGGAGCGTGCCACGTTGGGAACCTGTGCCTAC
TCGGGTAACCAGTTCGGAACGATTCTCATGCTGGCCACCAGTGGAGTGAT
TGCAGCCTCGCCAATCGGCTGGCCCAGCATCTTCTATATCTCTGGAGGAA
TCGGATGCGTGTGGTCGGTGGTGTACTTCTTCTTCGGCGCAGGATCGCCA
CAAGAGTGCAAGTCCATTTCGGCGGAGGAGAAGAAGCTGATCGAGATGTC
GCACGCCGACGAGGTGAGCGGTGGCCAGGAACAGCCGAAGGAGCAGTTGC
CCACGCCCTGTCTGAGCTTCTTCACTTCACCCGCTTTCCTCGTCCTGATC
GTCTCACACTCGGTGCACAACTGGGGGTTTCTGGACCCTGCTCACCGAGA
TCCCCAGCTACATGAAGAACATCCTGGGCAAGGACATCAAGTCGAATGCT
CTTCTCTCCTCGCTGCCCTACGTCTGCATGTTCGCCATGTCCTTTGTATT
CTCGTCGATATCCGCACAGTGACACGCACTGCATTTCAGTCTACGAGCAG
AGCTCTCACTCCATGGTCTGTGGATCTATGTCACTGTGCTGCTAGTGACC
GATCATCGACTGCTGGTCTACTCTGTTCCTGGCTGAT
UFO05080.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15096-RB | 1783 | CG15096-RB | 100..1127 | 9..1025 | 4820 | 98.5 | Plus |
| CG15096-RC | 3536 | CG15096-RC | 1893..2880 | 49..1025 | 4620 | 98.5 | Plus |
| CG15096-RA | 2060 | CG15096-RA | 417..1404 | 49..1025 | 4620 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18809192..18809975 | 970..186 | 3845 | 99.6 | Minus |
| 2R | 25286936 | 2R | 18810041..18810180 | 186..47 | 700 | 100 | Minus |
| 2R | 25286936 | 2R | 18811322..18811361 | 48..9 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:35:10 has no hits.
UFO05080.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:16:07 Download gff for
UFO05080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15096-RB | 95..1141 | 2..1038 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:36 Download gff for
UFO05080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15096-RB | 97..1143 | 2..1038 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:00 Download gff for
UFO05080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15096-RB | 97..1143 | 2..1038 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:00 Download gff for
UFO05080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18809109..18809975 | 186..1038 | 97 | <- | Minus |
| 2R | 18810042..18810178 | 49..185 | 100 | <- | Minus |
| 2R | 18811322..18811364 | 2..48 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:36 Download gff for
UFO05080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14696614..14697480 | 186..1038 | 97 | <- | Minus |
| arm_2R | 14697547..14697683 | 49..185 | 100 | <- | Minus |
| arm_2R | 14698827..14698869 | 2..48 | 91 | | Minus |
