UFO05087.5prime Sequence
1150 bp (1018 high quality bases) assembled on 2009-06-30
> UFO05087.5prime
CAGTCGACATGGAGGCAAATGGCGATACCAGCGCCTGCAATGGGTATTCG
GACAAGCAGCGGAAGGATGTGCGCGTCTGGTGCGATGGATGCTATGATAT
GGTACACTTCGGACATGCCAATTCTCTGCGACAAGCCAAGGCTCTTGGCG
ATAAGGTAATTGTGGGCATTCACACCGACGAGGAGATCACCAAGCACAAG
GGACCACCGGTCTTCACCGAGGAGGAGCGCGTCAAGATGGTCAAGGGCAT
CAAATGGGTGGATGAGGTGGTGCTCGGTGCTCCGTATGTGACCACACTGG
ATGTGCTCGACCAGAACAACTGTGATTTCTGTGTGCATGGAGATGACATT
ACAATGACAGCCGAAGGAGTGGACACATATCATTTGGTCAAATCAGCCAA
TCGCTACAAGGAAGTGAAACGCACAGCTGGAGTCTCGACCACTGACCTTG
TGGGCCGCATGTTGCTCCTGACACGCAACCACTTCCGTCAAGGATCCGCG
GAATATGATATCGAGAAAGAAGGTTCTTCGAACATGGGTCAAGATTCGGC
AGCCAAAAGTCCGTGGACCGGTTGTAGTCAGTTCTTGCCGACTACCCAAA
AGATCATACAGTTCAGTGATGGAAAGTCACCGAATCCCGGCGATAAGATT
GTTTATGTGGCTGGCGCCTTCGATCTCTTCCATGTGGGTCACCTGGACTT
TCTGGAAAAGGCTAAGAAACTGGGTGACTATCTGATTGTTGGCCTGCACA
CAGATCCCGTGGTGAACTCCTACAAGGGCAGCAACTATCCCATTATGAAT
CTGCACGAGCGCGTGCTCAGTGTTTTGGCCTGCAAGTTTGTCAATGAGGT
AGTAATCGGAGCTCCCTACTGTGTCACTGAAGAGCTGCTTGAGCACTTCA
AAATCGATGTTGTCTGTCATGGCGCACCACCCATTGCGCTTGAGAATGGC
AGGATCGATCCATATGCCGTTCCCAGACGCGAGCCATCTTTGAGCTGATC
GATTCCGGCAACAGATGACAACGGGCGCATCGTGGAGCGCATCATCTTCG
CACCGACTGGATATTGAGCGTCGCATCAGCTAGGAAAGAAGGAAATTCGA
GCCTTGAAGCACTCCACGCAAACAGACCAAGGCGGCAGCTTCCAGAACAT
UFO05087.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pect-RD | 2174 | CG5547-RD | 429..1540 | 9..1113 | 5140 | 98.2 | Plus |
| Pect-RC | 2153 | CG5547-RC | 429..1519 | 9..1113 | 4815 | 96.3 | Plus |
| Pect-RB | 2210 | CG5547-RB | 977..1576 | 521..1113 | 2580 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13208109..13208360 | 91..342 | 1260 | 100 | Plus |
| 2L | 23513712 | 2L | 13209660..13209845 | 651..836 | 930 | 100 | Plus |
| 2L | 23513712 | 2L | 13209909..13210151 | 835..1075 | 870 | 94.3 | Plus |
| 2L | 23513712 | 2L | 13209470..13209601 | 521..652 | 660 | 100 | Plus |
| 2L | 23513712 | 2L | 13208665..13208779 | 410..524 | 575 | 100 | Plus |
| 2L | 23513712 | 2L | 13204190..13204272 | 9..91 | 415 | 100 | Plus |
| 2L | 23513712 | 2L | 13208419..13208488 | 341..410 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:38:21 has no hits.
UFO05087.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:14:55 Download gff for
UFO05087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pect-RD | 414..1537 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:44 Download gff for
UFO05087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pect-RD | 420..1543 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:42 Download gff for
UFO05087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pect-RD | 420..1543 | 1..1116 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:42 Download gff for
UFO05087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13204181..13204272 | 1..91 | 96 | -> | Plus |
| 2L | 13208110..13208360 | 92..342 | 100 | -> | Plus |
| 2L | 13208421..13208487 | 343..409 | 100 | -> | Plus |
| 2L | 13208665..13208777 | 410..522 | 100 | -> | Plus |
| 2L | 13209472..13209599 | 523..650 | 100 | -> | Plus |
| 2L | 13209660..13209845 | 651..836 | 100 | -> | Plus |
| 2L | 13209911..13210197 | 837..1116 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:44 Download gff for
UFO05087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13209660..13209845 | 651..836 | 100 | -> | Plus |
| arm_2L | 13209911..13210197 | 837..1116 | 92 | | Plus |
| arm_2L | 13204181..13204272 | 1..91 | 96 | -> | Plus |
| arm_2L | 13208110..13208360 | 92..342 | 100 | -> | Plus |
| arm_2L | 13208421..13208487 | 343..409 | 100 | -> | Plus |
| arm_2L | 13208665..13208777 | 410..522 | 100 | -> | Plus |
| arm_2L | 13209472..13209599 | 523..650 | 100 | -> | Plus |
