UFO05088.5prime Sequence
1125 bp (1025 high quality bases) assembled on 2009-06-30
> UFO05088.5prime
CAGTCGACATGTCCGAAGAAAAGAAGAATGGCGATGAATTAAACGACTTG
CTGGACAGTGCTCTCCAGGATTTCGATAAAAGTGGTGCCGGTGACCAAAA
GGAGCCGTCCGCATCATCGGATGTGGCGACCAACGCTGGACCTGAGGGCT
CCGAGGATCCAGATGCGTTTTTCATTGAGCAGGCCAAGGTGCTGGCCGAT
CGCATGAACACGCTCTTCGGAGGTCCGGACACGCCCAGTGGCGATATTCC
GCCGCTGCCCCAGGATCCCGACCAGATCATGGCCGGTTTCAAAAAGATGG
CCGAAGCGGCAGCGCTCACCTTGAGCGGCGAAAATTCGGCCACCGACGAG
GATGTCTCCAAGTATTCTGATAGCATTTCCCAGGCTCTCAAGGGTCTGCA
AGAGGGCTCCGAGAACCTGGCTGCTCCCGCCTCGGAGAACGACATAGCCA
GCATGTTTGGTTCACTGAATCTTGAAGGGGTATGCATCCTGAAAATGAAA
TATGAATTCTCCTTGCTCAATCATGCAAGCTTTCTAGACCATTCGTTTGG
CGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATA
ATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCA
CCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATG
GAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCG
ATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTC
ATTAAGCATTCTGCCGACATGGAAAGCCATCACAAACGGCATGATGAACC
TGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCC
CATGGTGAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATC
AAACTGGTGAACTCACCCAGGGATGGCTGAGACGAAAAACATATTCTCAT
AAACCCTTTAGGAAATAGGCAGTTTCACGTACACGCCACATCTTGCAATA
TATGTGTAGACTGCGAATCGTCTGCATTCACTCCGAGCATGAACGTCAGT
TGCTCATGGAAACGGTACAGGTAAC
UFO05088.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex19-RC | 1596 | CG5325-RC | 480..951 | 9..480 | 2360 | 100 | Plus |
| Pex19-RA | 1217 | CG5325-RA | 101..572 | 9..480 | 2360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12094173..12094526 | 171..524 | 1755 | 99.7 | Plus |
| 2L | 23513712 | 2L | 12093994..12094111 | 58..175 | 590 | 100 | Plus |
| 2L | 23513712 | 2L | 12093862..12093913 | 9..60 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:56:19 has no hits.
UFO05088.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:14:57 Download gff for
UFO05088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5325-RB | 88..610 | 1..528 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:56 Download gff for
UFO05088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex19-RA | 97..575 | 1..484 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:07 Download gff for
UFO05088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex19-RA | 97..575 | 1..484 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:07 Download gff for
UFO05088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12093858..12093910 | 1..57 | 92 | -> | Plus |
| 2L | 12093994..12094111 | 58..175 | 100 | -> | Plus |
| 2L | 12094178..12094526 | 176..524 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:56 Download gff for
UFO05088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12093994..12094111 | 58..175 | 100 | -> | Plus |
| arm_2L | 12093858..12093910 | 1..57 | 92 | -> | Plus |
| arm_2L | 12094178..12094526 | 176..524 | 100 | == | Plus |
