UFO05091.5prime Sequence
1148 bp (999 high quality bases) assembled on 2009-06-30
> UFO05091.5prime
CAGTCGACATGGATCCAGTAGTACTTGTTTTATCTTATGGAGCAGTTCCT
GCACTGGAAATAGTCGAAAATATTTTATCTGAAGTGAATCAATCGAAGGA
ATCAACATCAACGGAGTGCTCACTTAATTGTTATAAGTGCATCATTAAAA
CCAAGTACTATAACACTTCTATCAACTTAATTCCATTTTCTGGAAAACTG
GAAGCTGTGCCGGAGAAAATTCTTCAAGCAACCGAGGCGTTGATTATTTA
CTTTGATTCACAAGACACCTCCTTTATCGACACTATTCCCAAGACGTTAG
CGAAGAATGAACAGATTCAGCTGGGCTTTCTGCTAACCTCTTCCACTTCA
GAAGAAGGTGGATTGTCCTTTGGAGAAATTAAGGAGAAAACGAATTTCCT
TTTTGACATCATAACATTGAGAAGCAATGTTGAGAGTGACCCAGATGAAG
CTGAAAAGGACTACGAGGAAGTTGTGGAGGGTTTGAAAAACGTAGTTTGG
TCCAATGTCAAGTTTGGTTCTGATCACAAGGAGGAAATCAGTGCCGACGA
GCTGGATAGTCAGCTGAAGGACTTTGAAAACTTACTCCTCACGGCGCAAA
ATCTACGTAACGATACGAGTCTCACTCGGGAACAATTTCTGGATCGGGCT
GAGCAGTTTGCAGGCATAGTTTCCTCGATTTTAAATGACAATGATAGCGA
CGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTC
ATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCC
TGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCA
ACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGAT
CTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGGCCGGCTGCA
CTCATCGCAGTACTGGTTGTAATTCATTAAGCATTCTGGCCGACATGGAA
GCCATCACAACGGCATGATGAACCTGAATCGCAGCGGCATCAGCACTTGT
CGCTTGGCGTATAATATTTGCCCATGGTGAAACGGGGGCGAAAAGTGTCT
ATATGGTCCGTTAATCAACTGGGAACTCACCAAGGAATGCTGAACGAA
UFO05091.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32109-RA | 1052 | CG32109-RA | 65..757 | 9..701 | 3465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12745981..12746236 | 267..522 | 1280 | 100 | Plus |
| 3L | 28110227 | 3L | 12745729..12745925 | 70..266 | 985 | 100 | Plus |
| 3L | 28110227 | 3L | 12746296..12746475 | 522..701 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 12745408..12745468 | 9..69 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:51:40 has no hits.
UFO05091.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:15:14 Download gff for
UFO05091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32109-RA | 52..754 | 1..705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:16:26 Download gff for
UFO05091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32109-RA | 58..762 | 1..708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:06 Download gff for
UFO05091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32109-RA | 58..762 | 1..708 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:06 Download gff for
UFO05091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12746297..12746480 | 523..708 | 98 | == | Plus |
| 3L | 12745401..12745468 | 1..69 | 94 | -> | Plus |
| 3L | 12745729..12745925 | 70..266 | 100 | -> | Plus |
| 3L | 12745981..12746236 | 267..522 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:16:26 Download gff for
UFO05091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12738501..12738568 | 1..69 | 94 | -> | Plus |
| arm_3L | 12738829..12739025 | 70..266 | 100 | -> | Plus |
| arm_3L | 12739081..12739336 | 267..522 | 100 | -> | Plus |
| arm_3L | 12739397..12739580 | 523..708 | 98 | == | Plus |
